miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17120 5' -51.5 NC_004333.2 + 616 0.72 0.552332
Target:  5'- --cGCGCCCUGAACGUgcaaGGCuacguCGAGUc -3'
miRNA:   3'- ccaUGCGGGGCUUGCAa---UCGu----GUUCA- -5'
17120 5' -51.5 NC_004333.2 + 648 0.66 0.876816
Target:  5'- --gACGCCCgUGAACGUgaaaCGCAAGg -3'
miRNA:   3'- ccaUGCGGG-GCUUGCAauc-GUGUUCa -5'
17120 5' -51.5 NC_004333.2 + 773 0.67 0.805155
Target:  5'- --gGCGCUCgCGGGCGgcGGCACGAu- -3'
miRNA:   3'- ccaUGCGGG-GCUUGCaaUCGUGUUca -5'
17120 5' -51.5 NC_004333.2 + 5532 0.66 0.868713
Target:  5'- aGGUcAUGCCguggCCGGcgACGgcuUGGCGCGAGUg -3'
miRNA:   3'- -CCA-UGCGG----GGCU--UGCa--AUCGUGUUCA- -5'
17120 5' -51.5 NC_004333.2 + 5736 1.09 0.002067
Target:  5'- gGGUACGCCCCGAACGUUAGCACAAGUc -3'
miRNA:   3'- -CCAUGCGGGGCUUGCAAUCGUGUUCA- -5'
17120 5' -51.5 NC_004333.2 + 5778 0.68 0.753765
Target:  5'- aGGUuCGCCCCGAAUucauuuCACAAGUc -3'
miRNA:   3'- -CCAuGCGGGGCUUGcaauc-GUGUUCA- -5'
17120 5' -51.5 NC_004333.2 + 8315 0.67 0.805155
Target:  5'- gGGgcucGCGCCCCGcuauGCGUUAcGCGCccGUa -3'
miRNA:   3'- -CCa---UGCGGGGCu---UGCAAU-CGUGuuCA- -5'
17120 5' -51.5 NC_004333.2 + 9514 0.66 0.868713
Target:  5'- uGGUGCGCaggacggcgaaCCGGACGgcguGCGCAGc- -3'
miRNA:   3'- -CCAUGCGg----------GGCUUGCaau-CGUGUUca -5'
17120 5' -51.5 NC_004333.2 + 11286 0.67 0.805155
Target:  5'- aGGagcCGCgCCCGAaucACGUgcGCGCGGGUc -3'
miRNA:   3'- -CCau-GCG-GGGCU---UGCAauCGUGUUCA- -5'
17120 5' -51.5 NC_004333.2 + 12454 0.68 0.785095
Target:  5'- --gGCGCgCCGGGCGg-GGCGCGGGc -3'
miRNA:   3'- ccaUGCGgGGCUUGCaaUCGUGUUCa -5'
17120 5' -51.5 NC_004333.2 + 16840 0.68 0.774805
Target:  5'- cGGUACGCCuuGc-CGUgucGGCGCAGa- -3'
miRNA:   3'- -CCAUGCGGggCuuGCAa--UCGUGUUca -5'
17120 5' -51.5 NC_004333.2 + 18494 0.67 0.804169
Target:  5'- cGGUgucgACGCCgCCGAucgcgagGCGUUgcgcuucggacGGCACGAGc -3'
miRNA:   3'- -CCA----UGCGG-GGCU-------UGCAA-----------UCGUGUUCa -5'
17120 5' -51.5 NC_004333.2 + 18541 0.68 0.795216
Target:  5'- gGGUACGCCuCCGGugcCGgguuGCGCGAa- -3'
miRNA:   3'- -CCAUGCGG-GGCUu--GCaau-CGUGUUca -5'
17120 5' -51.5 NC_004333.2 + 18937 0.7 0.686755
Target:  5'- --gGCGCCCCGGcggcaauGCGUUGcGCACGGc- -3'
miRNA:   3'- ccaUGCGGGGCU-------UGCAAU-CGUGUUca -5'
17120 5' -51.5 NC_004333.2 + 19937 0.67 0.824442
Target:  5'- --aGCGCgCCGGGCGgcgAGCcgccGCGAGUg -3'
miRNA:   3'- ccaUGCGgGGCUUGCaa-UCG----UGUUCA- -5'
17120 5' -51.5 NC_004333.2 + 20237 0.66 0.868713
Target:  5'- uGUGCG-CCCGAGcCGgcGGC-CGAGUa -3'
miRNA:   3'- cCAUGCgGGGCUU-GCaaUCGuGUUCA- -5'
17120 5' -51.5 NC_004333.2 + 20993 0.67 0.814901
Target:  5'- gGGUGCGUUUCGAGCGcgUGGCAg---- -3'
miRNA:   3'- -CCAUGCGGGGCUUGCa-AUCGUguuca -5'
17120 5' -51.5 NC_004333.2 + 21130 0.69 0.699074
Target:  5'- --aGCGCCCUGAACG--AGCGCGc-- -3'
miRNA:   3'- ccaUGCGGGGCUUGCaaUCGUGUuca -5'
17120 5' -51.5 NC_004333.2 + 21254 0.67 0.833768
Target:  5'- --aAUGCCCCGAgcaggccggccuGCGgcAGCGCGAa- -3'
miRNA:   3'- ccaUGCGGGGCU------------UGCaaUCGUGUUca -5'
17120 5' -51.5 NC_004333.2 + 31382 0.68 0.795216
Target:  5'- cGG-GCGCCgUGcucGGCGUcGGCGCAGGUg -3'
miRNA:   3'- -CCaUGCGGgGC---UUGCAaUCGUGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.