Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 17120 | 5' | -51.5 | NC_004333.2 | + | 18541 | 0.68 | 0.795216 |
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Target: 5'- gGGUACGCCuCCGGugcCGgguuGCGCGAa- -3' miRNA: 3'- -CCAUGCGG-GGCUu--GCaau-CGUGUUca -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 42097 | 0.68 | 0.785095 |
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Target: 5'- --cACGCCCCGcuCGUUGGcCGCGc-- -3' miRNA: 3'- ccaUGCGGGGCuuGCAAUC-GUGUuca -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 12454 | 0.68 | 0.785095 |
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Target: 5'- --gGCGCgCCGGGCGg-GGCGCGGGc -3' miRNA: 3'- ccaUGCGgGGCUUGCaaUCGUGUUCa -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 16840 | 0.68 | 0.774805 |
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Target: 5'- cGGUACGCCuuGc-CGUgucGGCGCAGa- -3' miRNA: 3'- -CCAUGCGGggCuuGCAa--UCGUGUUca -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 5778 | 0.68 | 0.753765 |
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Target: 5'- aGGUuCGCCCCGAAUucauuuCACAAGUc -3' miRNA: 3'- -CCAuGCGGGGCUUGcaauc-GUGUUCA- -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 46680 | 0.69 | 0.743041 |
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Target: 5'- --aACGCCCCGAuauCGg-GGCGuCAAGUa -3' miRNA: 3'- ccaUGCGGGGCUu--GCaaUCGU-GUUCA- -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 21130 | 0.69 | 0.699074 |
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Target: 5'- --aGCGCCCUGAACG--AGCGCGc-- -3' miRNA: 3'- ccaUGCGGGGCUUGCaaUCGUGUuca -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 18937 | 0.7 | 0.686755 |
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Target: 5'- --gGCGCCCCGGcggcaauGCGUUGcGCACGGc- -3' miRNA: 3'- ccaUGCGGGGCU-------UGCAAU-CGUGUUca -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 616 | 0.72 | 0.552332 |
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Target: 5'- --cGCGCCCUGAACGUgcaaGGCuacguCGAGUc -3' miRNA: 3'- ccaUGCGGGGCUUGCAa---UCGu----GUUCA- -5' |
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| 17120 | 5' | -51.5 | NC_004333.2 | + | 5736 | 1.09 | 0.002067 |
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Target: 5'- gGGUACGCCCCGAACGUUAGCACAAGUc -3' miRNA: 3'- -CCAUGCGGGGCUUGCAAUCGUGUUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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