miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17121 3' -51.4 NC_004333.2 + 21200 0.66 0.888723
Target:  5'- uGC-GCGcGCUC-GUUCaGGGCGCuCGCGa -3'
miRNA:   3'- -CGuUGCaCGAGuUAAG-CUCGCG-GUGC- -5'
17121 3' -51.4 NC_004333.2 + 11203 0.66 0.888723
Target:  5'- cGCGACccGCgcgCAcgugAUUCGGGCGCgGCu -3'
miRNA:   3'- -CGUUGcaCGa--GU----UAAGCUCGCGgUGc -5'
17121 3' -51.4 NC_004333.2 + 37342 0.66 0.888723
Target:  5'- uCGACGUcgaUCGGaaaGAGCGCCGCGc -3'
miRNA:   3'- cGUUGCAcg-AGUUaagCUCGCGGUGC- -5'
17121 3' -51.4 NC_004333.2 + 36168 0.66 0.881019
Target:  5'- uGCGuACGUgGCUgGcg-CGcAGCGCCGCGu -3'
miRNA:   3'- -CGU-UGCA-CGAgUuaaGC-UCGCGGUGC- -5'
17121 3' -51.4 NC_004333.2 + 4190 0.66 0.881019
Target:  5'- aGCGGCGUGUgc--UUCu-GCGCCugGa -3'
miRNA:   3'- -CGUUGCACGaguuAAGcuCGCGGugC- -5'
17121 3' -51.4 NC_004333.2 + 6930 0.66 0.873042
Target:  5'- -aGGCGUGCg-----CGGGCGCCAg- -3'
miRNA:   3'- cgUUGCACGaguuaaGCUCGCGGUgc -5'
17121 3' -51.4 NC_004333.2 + 10021 0.66 0.873042
Target:  5'- cGCGACGUGCUUGAUcaugagGGGCaGCCccuCGa -3'
miRNA:   3'- -CGUUGCACGAGUUAag----CUCG-CGGu--GC- -5'
17121 3' -51.4 NC_004333.2 + 47074 0.66 0.864797
Target:  5'- cGCAACGUGagcgCGAUcUUucGCGCCGCu -3'
miRNA:   3'- -CGUUGCACga--GUUA-AGcuCGCGGUGc -5'
17121 3' -51.4 NC_004333.2 + 27526 0.66 0.864797
Target:  5'- uCGACGUG-UCGA-UCGcaAGUGCCGCGc -3'
miRNA:   3'- cGUUGCACgAGUUaAGC--UCGCGGUGC- -5'
17121 3' -51.4 NC_004333.2 + 32304 0.66 0.864797
Target:  5'- uCGACGUGCgucagcaggUCGGUcaCGAGCGCgugCACGg -3'
miRNA:   3'- cGUUGCACG---------AGUUAa-GCUCGCG---GUGC- -5'
17121 3' -51.4 NC_004333.2 + 44030 0.66 0.863959
Target:  5'- cUAACG-GCUCGAUaaacuaaUCGGGCcGCUACu -3'
miRNA:   3'- cGUUGCaCGAGUUA-------AGCUCG-CGGUGc -5'
17121 3' -51.4 NC_004333.2 + 28866 0.66 0.856293
Target:  5'- cCGGCGcGCUCAAgcgCucGUGCCGCGc -3'
miRNA:   3'- cGUUGCaCGAGUUaa-GcuCGCGGUGC- -5'
17121 3' -51.4 NC_004333.2 + 37405 0.66 0.856293
Target:  5'- gGCGACGca---GAUUCGAGCGCguCGa -3'
miRNA:   3'- -CGUUGCacgagUUAAGCUCGCGguGC- -5'
17121 3' -51.4 NC_004333.2 + 2245 0.66 0.855429
Target:  5'- cGCAccgauguACGUGUaguuGUUCGAGCGCaGCGc -3'
miRNA:   3'- -CGU-------UGCACGagu-UAAGCUCGCGgUGC- -5'
17121 3' -51.4 NC_004333.2 + 37559 0.67 0.85107
Target:  5'- gGCGGCccauUGCUCGAUcugcaugcguuuggCGAGCGCCGg- -3'
miRNA:   3'- -CGUUGc---ACGAGUUAa-------------GCUCGCGGUgc -5'
17121 3' -51.4 NC_004333.2 + 25228 0.67 0.847538
Target:  5'- gGCgAGCGUG-UCGAUcggaggcaUCGGGCagGCCGCGa -3'
miRNA:   3'- -CG-UUGCACgAGUUA--------AGCUCG--CGGUGC- -5'
17121 3' -51.4 NC_004333.2 + 38535 0.67 0.838541
Target:  5'- gGCAGCGcaaUCAucgCGucGCGCCACGg -3'
miRNA:   3'- -CGUUGCacgAGUuaaGCu-CGCGGUGC- -5'
17121 3' -51.4 NC_004333.2 + 25418 0.67 0.829311
Target:  5'- uGCAGCGUGC-CGGcggCGGcCGUCACGc -3'
miRNA:   3'- -CGUUGCACGaGUUaa-GCUcGCGGUGC- -5'
17121 3' -51.4 NC_004333.2 + 8471 0.67 0.81986
Target:  5'- gGCGACGuUGCUCGAcaCGGGCuaCAUc -3'
miRNA:   3'- -CGUUGC-ACGAGUUaaGCUCGcgGUGc -5'
17121 3' -51.4 NC_004333.2 + 8413 0.67 0.81986
Target:  5'- aGCAACGUcGC-CGAUaCG-GUGCCGCc -3'
miRNA:   3'- -CGUUGCA-CGaGUUAaGCuCGCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.