miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17121 5' -58.9 NC_004333.2 + 23673 0.66 0.519674
Target:  5'- gGUCGCGCGCaUCGcuuGGUGGauGAugcUCGg -3'
miRNA:   3'- -CAGCGCGCGgAGCu--CCAUCggCU---AGC- -5'
17121 5' -58.9 NC_004333.2 + 45316 0.66 0.519674
Target:  5'- -aCGCGCGCUUCGAu---GCCGGacaggUCGg -3'
miRNA:   3'- caGCGCGCGGAGCUccauCGGCU-----AGC- -5'
17121 5' -58.9 NC_004333.2 + 45899 0.66 0.489048
Target:  5'- -aCGagGCGCuCUCGAGGUGcuuGCCGAg-- -3'
miRNA:   3'- caGCg-CGCG-GAGCUCCAU---CGGCUagc -5'
17121 5' -58.9 NC_004333.2 + 12693 0.67 0.458318
Target:  5'- uUCGCGaacucgaCGaCCUCGAaGUGGCCGAgUCGc -3'
miRNA:   3'- cAGCGC-------GC-GGAGCUcCAUCGGCU-AGC- -5'
17121 5' -58.9 NC_004333.2 + 11832 0.67 0.421178
Target:  5'- gGUCGCGCa-CUCaAGGUGaacgucgguGCCGGUCGg -3'
miRNA:   3'- -CAGCGCGcgGAGcUCCAU---------CGGCUAGC- -5'
17121 5' -58.9 NC_004333.2 + 38401 0.67 0.411951
Target:  5'- gGUCGgcaCGC-CCUCGAGGcgcauuucGCCGGUCGc -3'
miRNA:   3'- -CAGC---GCGcGGAGCUCCau------CGGCUAGC- -5'
17121 5' -58.9 NC_004333.2 + 39599 0.67 0.411951
Target:  5'- aUCG-GCGCCgcaaccgaugUCGAuaUAGCCGAUCGg -3'
miRNA:   3'- cAGCgCGCGG----------AGCUccAUCGGCUAGC- -5'
17121 5' -58.9 NC_004333.2 + 44601 0.67 0.411951
Target:  5'- -gCGCGCGaagugCUCGGGGUgaucGGCCGG-CGu -3'
miRNA:   3'- caGCGCGCg----GAGCUCCA----UCGGCUaGC- -5'
17121 5' -58.9 NC_004333.2 + 40802 0.68 0.393877
Target:  5'- uGUCGCuCGCCccgUCGAuGG-AGCUGAUCa -3'
miRNA:   3'- -CAGCGcGCGG---AGCU-CCaUCGGCUAGc -5'
17121 5' -58.9 NC_004333.2 + 47128 0.68 0.367749
Target:  5'- cGUUGCGCGCaaaCUCGAGGaAGCCc---- -3'
miRNA:   3'- -CAGCGCGCG---GAGCUCCaUCGGcuagc -5'
17121 5' -58.9 NC_004333.2 + 14409 0.68 0.362668
Target:  5'- uGUCGCGCGUCUacaucgaagaggcggCGAacGGUGccgcGCUGAUCGa -3'
miRNA:   3'- -CAGCGCGCGGA---------------GCU--CCAU----CGGCUAGC- -5'
17121 5' -58.9 NC_004333.2 + 3617 0.68 0.359308
Target:  5'- aGUCGgGCGCCUgCGGGccGUAGCa-GUCGa -3'
miRNA:   3'- -CAGCgCGCGGA-GCUC--CAUCGgcUAGC- -5'
17121 5' -58.9 NC_004333.2 + 14248 0.68 0.359308
Target:  5'- -gCGCGCGCCUCuuucgAGCCGAgCGg -3'
miRNA:   3'- caGCGCGCGGAGcuccaUCGGCUaGC- -5'
17121 5' -58.9 NC_004333.2 + 14713 0.69 0.351003
Target:  5'- --aGUGCGCCaagcggcaggUCGGGauuGUAGCCGAUCu -3'
miRNA:   3'- cagCGCGCGG----------AGCUC---CAUCGGCUAGc -5'
17121 5' -58.9 NC_004333.2 + 40849 0.69 0.326916
Target:  5'- -gCGCGCGCCUUcuGGUcGCCGG-CGa -3'
miRNA:   3'- caGCGCGCGGAGcuCCAuCGGCUaGC- -5'
17121 5' -58.9 NC_004333.2 + 41379 0.69 0.326916
Target:  5'- aUCGCGCGCCgggCGAGcucGGCCucGUCGa -3'
miRNA:   3'- cAGCGCGCGGa--GCUCca-UCGGc-UAGC- -5'
17121 5' -58.9 NC_004333.2 + 1862 0.7 0.29674
Target:  5'- uGUCGUgcgguucugacGCGCCUggcccggauuggCGGGGUcGCCGAUCa -3'
miRNA:   3'- -CAGCG-----------CGCGGA------------GCUCCAuCGGCUAGc -5'
17121 5' -58.9 NC_004333.2 + 2571 0.71 0.242969
Target:  5'- cGUCGCGCccgaUCUCGAGGcAGCguCGAUCGu -3'
miRNA:   3'- -CAGCGCGc---GGAGCUCCaUCG--GCUAGC- -5'
17121 5' -58.9 NC_004333.2 + 17624 0.71 0.23685
Target:  5'- cGUCGUgcaGCGCUUCGGGGauguGCgCGAUCGc -3'
miRNA:   3'- -CAGCG---CGCGGAGCUCCau--CG-GCUAGC- -5'
17121 5' -58.9 NC_004333.2 + 38331 0.72 0.224997
Target:  5'- ---aUGCGCCUCGAGGgcguGCCGAcCGa -3'
miRNA:   3'- cagcGCGCGGAGCUCCau--CGGCUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.