miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17122 5' -55.2 NC_004333.2 + 30402 0.66 0.658261
Target:  5'- cUGCcg-GUGCGGCCGcgCGuauGGCGGGUg -3'
miRNA:   3'- -ACGuaaCGCGUCGGUa-GC---UCGCCUAg -5'
17122 5' -55.2 NC_004333.2 + 31735 0.66 0.658261
Target:  5'- gGCGgaUGCGaagucCGGCCcgAUCGAGCaGAUCg -3'
miRNA:   3'- aCGUa-ACGC-----GUCGG--UAGCUCGcCUAG- -5'
17122 5' -55.2 NC_004333.2 + 6923 0.66 0.658261
Target:  5'- aUGCAgUGCGCAGCCGcCGguAGCcGAc- -3'
miRNA:   3'- -ACGUaACGCGUCGGUaGC--UCGcCUag -5'
17122 5' -55.2 NC_004333.2 + 23810 0.66 0.646981
Target:  5'- uUGguUUGUGCGGUCAugUCGAucgccucacGCGGAa- -3'
miRNA:   3'- -ACguAACGCGUCGGU--AGCU---------CGCCUag -5'
17122 5' -55.2 NC_004333.2 + 13359 0.66 0.646981
Target:  5'- gUGUAcggGCGCGGCa--CGAGCGGcgUg -3'
miRNA:   3'- -ACGUaa-CGCGUCGguaGCUCGCCuaG- -5'
17122 5' -55.2 NC_004333.2 + 28906 0.66 0.646981
Target:  5'- cGCAggccgGCGCAuacuuGCCGUCGgugcguAGCGGGc- -3'
miRNA:   3'- aCGUaa---CGCGU-----CGGUAGC------UCGCCUag -5'
17122 5' -55.2 NC_004333.2 + 21773 0.66 0.646981
Target:  5'- cGCAcgUGCGCauagAGCgCGUCGAGCuGcUCg -3'
miRNA:   3'- aCGUa-ACGCG----UCG-GUAGCUCGcCuAG- -5'
17122 5' -55.2 NC_004333.2 + 35953 0.66 0.635686
Target:  5'- cGCGaucUGCGCauucaAGCCGUCGAGCa---- -3'
miRNA:   3'- aCGUa--ACGCG-----UCGGUAGCUCGccuag -5'
17122 5' -55.2 NC_004333.2 + 14304 0.66 0.624388
Target:  5'- gGCGcgcGCGCAcGCCGUCGcaUGGGUCu -3'
miRNA:   3'- aCGUaa-CGCGU-CGGUAGCucGCCUAG- -5'
17122 5' -55.2 NC_004333.2 + 34575 0.66 0.613097
Target:  5'- gGUAUUGCGCGGUaaccagauuUAUUGuGGCGGAg- -3'
miRNA:   3'- aCGUAACGCGUCG---------GUAGC-UCGCCUag -5'
17122 5' -55.2 NC_004333.2 + 19832 0.66 0.611969
Target:  5'- gUGCGUUGgaGCGGCCgAUCGcgucguugacggcAGCGGcgCc -3'
miRNA:   3'- -ACGUAACg-CGUCGG-UAGC-------------UCGCCuaG- -5'
17122 5' -55.2 NC_004333.2 + 16737 0.67 0.601824
Target:  5'- cGCGcgGUGCAGCac-CGGGCaGGUCg -3'
miRNA:   3'- aCGUaaCGCGUCGguaGCUCGcCUAG- -5'
17122 5' -55.2 NC_004333.2 + 38256 0.67 0.579369
Target:  5'- cGCAgaGCuucucgGCGGCCAUugCGAGCGGcgUg -3'
miRNA:   3'- aCGUaaCG------CGUCGGUA--GCUCGCCuaG- -5'
17122 5' -55.2 NC_004333.2 + 9232 0.67 0.579369
Target:  5'- cGCAagcGCGCAGCUgcgGUCGAGCaGGc- -3'
miRNA:   3'- aCGUaa-CGCGUCGG---UAGCUCGcCUag -5'
17122 5' -55.2 NC_004333.2 + 25636 0.67 0.576015
Target:  5'- cGCuguUUGCGCAGCUgaucgccaaugucgAcccgcugaccUCGAGCGGcgCg -3'
miRNA:   3'- aCGu--AACGCGUCGG--------------U----------AGCUCGCCuaG- -5'
17122 5' -55.2 NC_004333.2 + 39247 0.67 0.557098
Target:  5'- gUGCAgcgcGCGCAGCa--CGGGCGGcaggauGUCg -3'
miRNA:   3'- -ACGUaa--CGCGUCGguaGCUCGCC------UAG- -5'
17122 5' -55.2 NC_004333.2 + 45240 0.67 0.546052
Target:  5'- cGCAUcagcaaGCGCGGCCAguaUCGGGCcGAcuUCg -3'
miRNA:   3'- aCGUAa-----CGCGUCGGU---AGCUCGcCU--AG- -5'
17122 5' -55.2 NC_004333.2 + 20967 0.68 0.535078
Target:  5'- cGCAaacgcGCGCGGCgCGggCGAGUGGGUg -3'
miRNA:   3'- aCGUaa---CGCGUCG-GUa-GCUCGCCUAg -5'
17122 5' -55.2 NC_004333.2 + 45107 0.68 0.533985
Target:  5'- aGCGuUUGCGCGccGCCAgcgccacgcgcggUCGAGCGGc-- -3'
miRNA:   3'- aCGU-AACGCGU--CGGU-------------AGCUCGCCuag -5'
17122 5' -55.2 NC_004333.2 + 10824 0.68 0.513373
Target:  5'- cGCGUUGCGCA--CGUgGAGCGGccgCa -3'
miRNA:   3'- aCGUAACGCGUcgGUAgCUCGCCua-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.