miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17123 3' -55.2 NC_004333.2 + 20395 0.66 0.658621
Target:  5'- --gCCGU--GGCCGCAGuGgccgCGCCGc- -3'
miRNA:   3'- aaaGGCAuuUCGGCGUC-Ca---GCGGCac -5'
17123 3' -55.2 NC_004333.2 + 28727 0.66 0.624896
Target:  5'- --gCCGUAGAaaCGCAGGUCgGCCa-- -3'
miRNA:   3'- aaaGGCAUUUcgGCGUCCAG-CGGcac -5'
17123 3' -55.2 NC_004333.2 + 31406 0.67 0.591228
Target:  5'- -gUCUGaUGAAGCUggccggcauuGCGGG-CGCCGUGc -3'
miRNA:   3'- aaAGGC-AUUUCGG----------CGUCCaGCGGCAC- -5'
17123 3' -55.2 NC_004333.2 + 2524 0.67 0.591228
Target:  5'- -cUUCGUucGGCgCGCAGGUguucgccgCGCCGUa -3'
miRNA:   3'- aaAGGCAuuUCG-GCGUCCA--------GCGGCAc -5'
17123 3' -55.2 NC_004333.2 + 7397 0.67 0.580065
Target:  5'- cUUCCGUcagaaGAAGUCgGCAGGcacguggggUGCCGUGa -3'
miRNA:   3'- aAAGGCA-----UUUCGG-CGUCCa--------GCGGCAC- -5'
17123 3' -55.2 NC_004333.2 + 19370 0.67 0.578951
Target:  5'- cUUUCCGUAGAcggccgugugcuuGCuCGCgagcagcaccAGGUCGCCGg- -3'
miRNA:   3'- -AAAGGCAUUU-------------CG-GCG----------UCCAGCGGCac -5'
17123 3' -55.2 NC_004333.2 + 32732 0.68 0.535948
Target:  5'- --gCCGgcGAGCagaacgucacgCGCAGGUCGCUGc- -3'
miRNA:   3'- aaaGGCauUUCG-----------GCGUCCAGCGGCac -5'
17123 3' -55.2 NC_004333.2 + 9075 0.68 0.514322
Target:  5'- --cCUGgcAAGCCGCGaacgccgcgucGGUCGCCGc- -3'
miRNA:   3'- aaaGGCauUUCGGCGU-----------CCAGCGGCac -5'
17123 3' -55.2 NC_004333.2 + 2401 0.69 0.49306
Target:  5'- --gCCGgc-GGUCGCcuGGUCGCCGUa -3'
miRNA:   3'- aaaGGCauuUCGGCGu-CCAGCGGCAc -5'
17123 3' -55.2 NC_004333.2 + 21156 0.72 0.308259
Target:  5'- -gUUCGUGAAGCCGCAcGUCGCauaGUu -3'
miRNA:   3'- aaAGGCAUUUCGGCGUcCAGCGg--CAc -5'
17123 3' -55.2 NC_004333.2 + 7387 1.05 0.001326
Target:  5'- uUUUCCGUAAAGCCGCAGGUCGCCGUGu -3'
miRNA:   3'- -AAAGGCAUUUCGGCGUCCAGCGGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.