miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17123 5' -62 NC_004333.2 + 17828 0.66 0.353358
Target:  5'- cCGCGCGGCGCCgGcuGAauGCUuGCGCa--- -3'
miRNA:   3'- -GCGCGCCGCGGgU--CU--CGA-CGUGcucu -5'
17123 5' -62 NC_004333.2 + 41745 0.66 0.353358
Target:  5'- gGCGCGggcgacucgcGCGCCgGGcuaugGGuCUGCACGAGc -3'
miRNA:   3'- gCGCGC----------CGCGGgUC-----UC-GACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 39330 0.66 0.345246
Target:  5'- gCGCGCGuGCGCCUgccGGCcGCuCGGGGu -3'
miRNA:   3'- -GCGCGC-CGCGGGuc-UCGaCGuGCUCU- -5'
17123 5' -62 NC_004333.2 + 9642 0.66 0.345246
Target:  5'- gGCGCGccuGCGCCC--GGCUGUucguuuuCGGGAa -3'
miRNA:   3'- gCGCGC---CGCGGGucUCGACGu------GCUCU- -5'
17123 5' -62 NC_004333.2 + 19268 0.66 0.345246
Target:  5'- aCGCaucCGGCGaCCUGGuGCUGCucGCGAGc -3'
miRNA:   3'- -GCGc--GCCGC-GGGUCuCGACG--UGCUCu -5'
17123 5' -62 NC_004333.2 + 19224 0.66 0.329427
Target:  5'- cCGCaCGGCGCUCGagcaauacGGGCUGgACGuGAc -3'
miRNA:   3'- -GCGcGCCGCGGGU--------CUCGACgUGCuCU- -5'
17123 5' -62 NC_004333.2 + 45120 0.66 0.32172
Target:  5'- cCGCGCGGUGUUCAGcGuUUGCGCGc-- -3'
miRNA:   3'- -GCGCGCCGCGGGUCuC-GACGUGCucu -5'
17123 5' -62 NC_004333.2 + 45065 0.66 0.314149
Target:  5'- cCGCGCGGCcgcGCCCGGgcaagaaaacGGCgGacuGCGAGGc -3'
miRNA:   3'- -GCGCGCCG---CGGGUC----------UCGaCg--UGCUCU- -5'
17123 5' -62 NC_004333.2 + 17074 0.66 0.314149
Target:  5'- aGCGCGGCGacggcguaugCCGcGAGUUGCGCGu-- -3'
miRNA:   3'- gCGCGCCGCg---------GGU-CUCGACGUGCucu -5'
17123 5' -62 NC_004333.2 + 780 0.67 0.306713
Target:  5'- uCGCcaCGGCGCUCGcGGGCggcgGCACGAu- -3'
miRNA:   3'- -GCGc-GCCGCGGGU-CUCGa---CGUGCUcu -5'
17123 5' -62 NC_004333.2 + 30203 0.67 0.299413
Target:  5'- gGCGgccaaGGCGCgCAGGGCaucuuccaguUGCGCGGGu -3'
miRNA:   3'- gCGCg----CCGCGgGUCUCG----------ACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 27607 0.67 0.299413
Target:  5'- aGCGCGGCGCCUu---CUGCAUGc-- -3'
miRNA:   3'- gCGCGCCGCGGGucucGACGUGCucu -5'
17123 5' -62 NC_004333.2 + 38629 0.67 0.29869
Target:  5'- -cCGUGGUGCCCGuucugaucggcccGGGCgGCACGGGc -3'
miRNA:   3'- gcGCGCCGCGGGU-------------CUCGaCGUGCUCu -5'
17123 5' -62 NC_004333.2 + 40846 0.67 0.292248
Target:  5'- aCGCGUGccuGCGgCCAGGuCUGCGCGAu- -3'
miRNA:   3'- -GCGCGC---CGCgGGUCUcGACGUGCUcu -5'
17123 5' -62 NC_004333.2 + 8942 0.67 0.292248
Target:  5'- uCGCGcCGGCGCuguCCAucGCgUGCGCGGGc -3'
miRNA:   3'- -GCGC-GCCGCG---GGUcuCG-ACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 31083 0.67 0.278321
Target:  5'- aGCGCcugcagguucGGCGCCUGGcccgucAGCgGCGCGAGu -3'
miRNA:   3'- gCGCG----------CCGCGGGUC------UCGaCGUGCUCu -5'
17123 5' -62 NC_004333.2 + 5069 0.67 0.271559
Target:  5'- gGCGCGGCGCUgaacagcguCAGcAGgUGUGCGAcGAg -3'
miRNA:   3'- gCGCGCCGCGG---------GUC-UCgACGUGCU-CU- -5'
17123 5' -62 NC_004333.2 + 20734 0.67 0.27089
Target:  5'- gGCGCGcGCGCugCCGGAcaucgccgacgcgGCUGCGCGccuGAa -3'
miRNA:   3'- gCGCGC-CGCG--GGUCU-------------CGACGUGCu--CU- -5'
17123 5' -62 NC_004333.2 + 20656 0.68 0.258431
Target:  5'- gGCGCuGCGCCaguggcaGGAgGC-GCACGGGAu -3'
miRNA:   3'- gCGCGcCGCGGg------UCU-CGaCGUGCUCU- -5'
17123 5' -62 NC_004333.2 + 13971 0.68 0.245826
Target:  5'- --gGCGGCGgCCGGuGC-GCGCGAGc -3'
miRNA:   3'- gcgCGCCGCgGGUCuCGaCGUGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.