Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17123 | 5' | -62 | NC_004333.2 | + | 38629 | 0.67 | 0.29869 |
Target: 5'- -cCGUGGUGCCCGuucugaucggcccGGGCgGCACGGGc -3' miRNA: 3'- gcGCGCCGCGGGU-------------CUCGaCGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 8942 | 0.67 | 0.292248 |
Target: 5'- uCGCGcCGGCGCuguCCAucGCgUGCGCGGGc -3' miRNA: 3'- -GCGC-GCCGCG---GGUcuCG-ACGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 31083 | 0.67 | 0.278321 |
Target: 5'- aGCGCcugcagguucGGCGCCUGGcccgucAGCgGCGCGAGu -3' miRNA: 3'- gCGCG----------CCGCGGGUC------UCGaCGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 5069 | 0.67 | 0.271559 |
Target: 5'- gGCGCGGCGCUgaacagcguCAGcAGgUGUGCGAcGAg -3' miRNA: 3'- gCGCGCCGCGG---------GUC-UCgACGUGCU-CU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 20734 | 0.67 | 0.27089 |
Target: 5'- gGCGCGcGCGCugCCGGAcaucgccgacgcgGCUGCGCGccuGAa -3' miRNA: 3'- gCGCGC-CGCG--GGUCU-------------CGACGUGCu--CU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 27607 | 0.67 | 0.299413 |
Target: 5'- aGCGCGGCGCCUu---CUGCAUGc-- -3' miRNA: 3'- gCGCGCCGCGGGucucGACGUGCucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 40846 | 0.67 | 0.292248 |
Target: 5'- aCGCGUGccuGCGgCCAGGuCUGCGCGAu- -3' miRNA: 3'- -GCGCGC---CGCgGGUCUcGACGUGCUcu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 30203 | 0.67 | 0.299413 |
Target: 5'- gGCGgccaaGGCGCgCAGGGCaucuuccaguUGCGCGGGu -3' miRNA: 3'- gCGCg----CCGCGgGUCUCG----------ACGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 780 | 0.67 | 0.306713 |
Target: 5'- uCGCcaCGGCGCUCGcGGGCggcgGCACGAu- -3' miRNA: 3'- -GCGc-GCCGCGGGU-CUCGa---CGUGCUcu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 45065 | 0.66 | 0.314149 |
Target: 5'- cCGCGCGGCcgcGCCCGGgcaagaaaacGGCgGacuGCGAGGc -3' miRNA: 3'- -GCGCGCCG---CGGGUC----------UCGaCg--UGCUCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 19268 | 0.66 | 0.345246 |
Target: 5'- aCGCaucCGGCGaCCUGGuGCUGCucGCGAGc -3' miRNA: 3'- -GCGc--GCCGC-GGGUCuCGACG--UGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 9642 | 0.66 | 0.345246 |
Target: 5'- gGCGCGccuGCGCCC--GGCUGUucguuuuCGGGAa -3' miRNA: 3'- gCGCGC---CGCGGGucUCGACGu------GCUCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 19224 | 0.66 | 0.329427 |
Target: 5'- cCGCaCGGCGCUCGagcaauacGGGCUGgACGuGAc -3' miRNA: 3'- -GCGcGCCGCGGGU--------CUCGACgUGCuCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 17828 | 0.66 | 0.353358 |
Target: 5'- cCGCGCGGCGCCgGcuGAauGCUuGCGCa--- -3' miRNA: 3'- -GCGCGCCGCGGgU--CU--CGA-CGUGcucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 17074 | 0.66 | 0.314149 |
Target: 5'- aGCGCGGCGacggcguaugCCGcGAGUUGCGCGu-- -3' miRNA: 3'- gCGCGCCGCg---------GGU-CUCGACGUGCucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 45120 | 0.66 | 0.32172 |
Target: 5'- cCGCGCGGUGUUCAGcGuUUGCGCGc-- -3' miRNA: 3'- -GCGCGCCGCGGGUCuC-GACGUGCucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 39330 | 0.66 | 0.345246 |
Target: 5'- gCGCGCGuGCGCCUgccGGCcGCuCGGGGu -3' miRNA: 3'- -GCGCGC-CGCGGGuc-UCGaCGuGCUCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 41745 | 0.66 | 0.353358 |
Target: 5'- gGCGCGggcgacucgcGCGCCgGGcuaugGGuCUGCACGAGc -3' miRNA: 3'- gCGCGC----------CGCGGgUC-----UC-GACGUGCUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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