miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17123 5' -62 NC_004333.2 + 780 0.67 0.306713
Target:  5'- uCGCcaCGGCGCUCGcGGGCggcgGCACGAu- -3'
miRNA:   3'- -GCGc-GCCGCGGGU-CUCGa---CGUGCUcu -5'
17123 5' -62 NC_004333.2 + 2940 0.69 0.227879
Target:  5'- aCGUGCcGCuguaGCCCuGcAGCUGCGCGAGc -3'
miRNA:   3'- -GCGCGcCG----CGGGuC-UCGACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 5069 0.67 0.271559
Target:  5'- gGCGCGGCGCUgaacagcguCAGcAGgUGUGCGAcGAg -3'
miRNA:   3'- gCGCGCCGCGG---------GUC-UCgACGUGCU-CU- -5'
17123 5' -62 NC_004333.2 + 5208 0.7 0.170897
Target:  5'- aCGgGCGGCucGCCCGuGAcggacgacaauguGCUGCGCGAGc -3'
miRNA:   3'- -GCgCGCCG--CGGGU-CU-------------CGACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 7426 1.08 0.000206
Target:  5'- aCGCGCGGCGCCCAGAGCUGCACGAGAc -3'
miRNA:   3'- -GCGCGCCGCGGGUCUCGACGUGCUCU- -5'
17123 5' -62 NC_004333.2 + 8650 0.72 0.131183
Target:  5'- gGCGCGGCGCCCGGc-UUGCuCGuGAc -3'
miRNA:   3'- gCGCGCCGCGGGUCucGACGuGCuCU- -5'
17123 5' -62 NC_004333.2 + 8942 0.67 0.292248
Target:  5'- uCGCGcCGGCGCuguCCAucGCgUGCGCGGGc -3'
miRNA:   3'- -GCGC-GCCGCG---GGUcuCG-ACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 9468 0.69 0.227879
Target:  5'- gGCGCGGgUGCCgCAccgccgccGAGCUGCuCGAGc -3'
miRNA:   3'- gCGCGCC-GCGG-GU--------CUCGACGuGCUCu -5'
17123 5' -62 NC_004333.2 + 9642 0.66 0.345246
Target:  5'- gGCGCGccuGCGCCC--GGCUGUucguuuuCGGGAa -3'
miRNA:   3'- gCGCGC---CGCGGGucUCGACGu------GCUCU- -5'
17123 5' -62 NC_004333.2 + 13645 0.76 0.064
Target:  5'- uCGCGCGGUaCUCGGgcAGCUGCGCGAGc -3'
miRNA:   3'- -GCGCGCCGcGGGUC--UCGACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 13819 0.71 0.158264
Target:  5'- gCGCGCGGCGUCCuacGcGCUcgacuucaacgGCACGAGc -3'
miRNA:   3'- -GCGCGCCGCGGGu--CuCGA-----------CGUGCUCu -5'
17123 5' -62 NC_004333.2 + 13971 0.68 0.245826
Target:  5'- --gGCGGCGgCCGGuGC-GCGCGAGc -3'
miRNA:   3'- gcgCGCCGCgGGUCuCGaCGUGCUCu -5'
17123 5' -62 NC_004333.2 + 17074 0.66 0.314149
Target:  5'- aGCGCGGCGacggcguaugCCGcGAGUUGCGCGu-- -3'
miRNA:   3'- gCGCGCCGCg---------GGU-CUCGACGUGCucu -5'
17123 5' -62 NC_004333.2 + 17828 0.66 0.353358
Target:  5'- cCGCGCGGCGCCgGcuGAauGCUuGCGCa--- -3'
miRNA:   3'- -GCGCGCCGCGGgU--CU--CGA-CGUGcucu -5'
17123 5' -62 NC_004333.2 + 19224 0.66 0.329427
Target:  5'- cCGCaCGGCGCUCGagcaauacGGGCUGgACGuGAc -3'
miRNA:   3'- -GCGcGCCGCGGGU--------CUCGACgUGCuCU- -5'
17123 5' -62 NC_004333.2 + 19268 0.66 0.345246
Target:  5'- aCGCaucCGGCGaCCUGGuGCUGCucGCGAGc -3'
miRNA:   3'- -GCGc--GCCGC-GGGUCuCGACG--UGCUCu -5'
17123 5' -62 NC_004333.2 + 19964 0.8 0.030629
Target:  5'- gGCGCGGaugGCCCAGAGCUGCugagcGCGGGc -3'
miRNA:   3'- gCGCGCCg--CGGGUCUCGACG-----UGCUCu -5'
17123 5' -62 NC_004333.2 + 20577 0.7 0.190294
Target:  5'- gCGCgGCGGCGgCCGGcagcGGUUGCGCGGc- -3'
miRNA:   3'- -GCG-CGCCGCgGGUC----UCGACGUGCUcu -5'
17123 5' -62 NC_004333.2 + 20656 0.68 0.258431
Target:  5'- gGCGCuGCGCCaguggcaGGAgGC-GCACGGGAu -3'
miRNA:   3'- gCGCGcCGCGGg------UCU-CGaCGUGCUCU- -5'
17123 5' -62 NC_004333.2 + 20734 0.67 0.27089
Target:  5'- gGCGCGcGCGCugCCGGAcaucgccgacgcgGCUGCGCGccuGAa -3'
miRNA:   3'- gCGCGC-CGCG--GGUCU-------------CGACGUGCu--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.