Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17123 | 5' | -62 | NC_004333.2 | + | 47015 | 0.7 | 0.171348 |
Target: 5'- gCGCGCGcCGCCUu-GGCUGCGCGcGAg -3' miRNA: 3'- -GCGCGCcGCGGGucUCGACGUGCuCU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 45994 | 0.69 | 0.20044 |
Target: 5'- uGCcacuCGGCGCCgAGGGCUGgCACGGc- -3' miRNA: 3'- gCGc---GCCGCGGgUCUCGAC-GUGCUcu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 45264 | 0.69 | 0.227879 |
Target: 5'- gCGCGUGGCGCCUu-GGCU-CGCGAa- -3' miRNA: 3'- -GCGCGCCGCGGGucUCGAcGUGCUcu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 45120 | 0.66 | 0.32172 |
Target: 5'- cCGCGCGGUGUUCAGcGuUUGCGCGc-- -3' miRNA: 3'- -GCGCGCCGCGGGUCuC-GACGUGCucu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 45065 | 0.66 | 0.314149 |
Target: 5'- cCGCGCGGCcgcGCCCGGgcaagaaaacGGCgGacuGCGAGGc -3' miRNA: 3'- -GCGCGCCG---CGGGUC----------UCGaCg--UGCUCU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 41745 | 0.66 | 0.353358 |
Target: 5'- gGCGCGggcgacucgcGCGCCgGGcuaugGGuCUGCACGAGc -3' miRNA: 3'- gCGCGC----------CGCGGgUC-----UC-GACGUGCUCu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 40846 | 0.67 | 0.292248 |
Target: 5'- aCGCGUGccuGCGgCCAGGuCUGCGCGAu- -3' miRNA: 3'- -GCGCGC---CGCgGGUCUcGACGUGCUcu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 39330 | 0.66 | 0.345246 |
Target: 5'- gCGCGCGuGCGCCUgccGGCcGCuCGGGGu -3' miRNA: 3'- -GCGCGC-CGCGGGuc-UCGaCGuGCUCU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 38748 | 0.7 | 0.175921 |
Target: 5'- aGCGCGGCGgCC--AGCUGCuCGAcGAa -3' miRNA: 3'- gCGCGCCGCgGGucUCGACGuGCU-CU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 38629 | 0.67 | 0.29869 |
Target: 5'- -cCGUGGUGCCCGuucugaucggcccGGGCgGCACGGGc -3' miRNA: 3'- gcGCGCCGCGGGU-------------CUCGaCGUGCUCu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 32522 | 0.72 | 0.124269 |
Target: 5'- uCGuCGCGGCGCUgaAGGGCgccgaGUACGAGAc -3' miRNA: 3'- -GC-GCGCCGCGGg-UCUCGa----CGUGCUCU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 31083 | 0.67 | 0.278321 |
Target: 5'- aGCGCcugcagguucGGCGCCUGGcccgucAGCgGCGCGAGu -3' miRNA: 3'- gCGCG----------CCGCGGGUC------UCGaCGUGCUCu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 30203 | 0.67 | 0.299413 |
Target: 5'- gGCGgccaaGGCGCgCAGGGCaucuuccaguUGCGCGGGu -3' miRNA: 3'- gCGCg----CCGCGgGUCUCG----------ACGUGCUCu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 27607 | 0.67 | 0.299413 |
Target: 5'- aGCGCGGCGCCUu---CUGCAUGc-- -3' miRNA: 3'- gCGCGCCGCGGGucucGACGUGCucu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 25956 | 0.69 | 0.211054 |
Target: 5'- aGCGCGGCGCUUGGcGCUcGCGCa--- -3' miRNA: 3'- gCGCGCCGCGGGUCuCGA-CGUGcucu -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 25939 | 0.68 | 0.239717 |
Target: 5'- gCGCGCGGCGCgaugccggcggCCAGuacGCgGCGCuGGAa -3' miRNA: 3'- -GCGCGCCGCG-----------GGUCu--CGaCGUGcUCU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 22077 | 0.72 | 0.132608 |
Target: 5'- aGCGCcaggaaagaGGCGCCCAGguuGGCgaccgucaagacgaGCACGAGAg -3' miRNA: 3'- gCGCG---------CCGCGGGUC---UCGa-------------CGUGCUCU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 21410 | 0.7 | 0.190294 |
Target: 5'- aGCGCGGCGCCgGaaugggcaaauuGGGCgGCGCaGGAc -3' miRNA: 3'- gCGCGCCGCGGgU------------CUCGaCGUGcUCU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 20734 | 0.67 | 0.27089 |
Target: 5'- gGCGCGcGCGCugCCGGAcaucgccgacgcgGCUGCGCGccuGAa -3' miRNA: 3'- gCGCGC-CGCG--GGUCU-------------CGACGUGCu--CU- -5' |
|||||||
17123 | 5' | -62 | NC_004333.2 | + | 20656 | 0.68 | 0.258431 |
Target: 5'- gGCGCuGCGCCaguggcaGGAgGC-GCACGGGAu -3' miRNA: 3'- gCGCGcCGCGGg------UCU-CGaCGUGCUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home