miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17123 5' -62 NC_004333.2 + 2940 0.69 0.227879
Target:  5'- aCGUGCcGCuguaGCCCuGcAGCUGCGCGAGc -3'
miRNA:   3'- -GCGCGcCG----CGGGuC-UCGACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 27607 0.67 0.299413
Target:  5'- aGCGCGGCGCCUu---CUGCAUGc-- -3'
miRNA:   3'- gCGCGCCGCGGGucucGACGUGCucu -5'
17123 5' -62 NC_004333.2 + 19224 0.66 0.329427
Target:  5'- cCGCaCGGCGCUCGagcaauacGGGCUGgACGuGAc -3'
miRNA:   3'- -GCGcGCCGCGGGU--------CUCGACgUGCuCU- -5'
17123 5' -62 NC_004333.2 + 41745 0.66 0.353358
Target:  5'- gGCGCGggcgacucgcGCGCCgGGcuaugGGuCUGCACGAGc -3'
miRNA:   3'- gCGCGC----------CGCGGgUC-----UC-GACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 7426 1.08 0.000206
Target:  5'- aCGCGCGGCGCCCAGAGCUGCACGAGAc -3'
miRNA:   3'- -GCGCGCCGCGGGUCUCGACGUGCUCU- -5'
17123 5' -62 NC_004333.2 + 13645 0.76 0.064
Target:  5'- uCGCGCGGUaCUCGGgcAGCUGCGCGAGc -3'
miRNA:   3'- -GCGCGCCGcGGGUC--UCGACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 8650 0.72 0.131183
Target:  5'- gGCGCGGCGCCCGGc-UUGCuCGuGAc -3'
miRNA:   3'- gCGCGCCGCGGGUCucGACGuGCuCU- -5'
17123 5' -62 NC_004333.2 + 22077 0.72 0.132608
Target:  5'- aGCGCcaggaaagaGGCGCCCAGguuGGCgaccgucaagacgaGCACGAGAg -3'
miRNA:   3'- gCGCG---------CCGCGGGUC---UCGa-------------CGUGCUCU- -5'
17123 5' -62 NC_004333.2 + 21410 0.7 0.190294
Target:  5'- aGCGCGGCGCCgGaaugggcaaauuGGGCgGCGCaGGAc -3'
miRNA:   3'- gCGCGCCGCGGgU------------CUCGaCGUGcUCU- -5'
17123 5' -62 NC_004333.2 + 38629 0.67 0.29869
Target:  5'- -cCGUGGUGCCCGuucugaucggcccGGGCgGCACGGGc -3'
miRNA:   3'- gcGCGCCGCGGGU-------------CUCGaCGUGCUCu -5'
17123 5' -62 NC_004333.2 + 5069 0.67 0.271559
Target:  5'- gGCGCGGCGCUgaacagcguCAGcAGgUGUGCGAcGAg -3'
miRNA:   3'- gCGCGCCGCGG---------GUC-UCgACGUGCU-CU- -5'
17123 5' -62 NC_004333.2 + 20734 0.67 0.27089
Target:  5'- gGCGCGcGCGCugCCGGAcaucgccgacgcgGCUGCGCGccuGAa -3'
miRNA:   3'- gCGCGC-CGCG--GGUCU-------------CGACGUGCu--CU- -5'
17123 5' -62 NC_004333.2 + 9468 0.69 0.227879
Target:  5'- gGCGCGGgUGCCgCAccgccgccGAGCUGCuCGAGc -3'
miRNA:   3'- gCGCGCC-GCGG-GU--------CUCGACGuGCUCu -5'
17123 5' -62 NC_004333.2 + 31083 0.67 0.278321
Target:  5'- aGCGCcugcagguucGGCGCCUGGcccgucAGCgGCGCGAGu -3'
miRNA:   3'- gCGCG----------CCGCGGGUC------UCGaCGUGCUCu -5'
17123 5' -62 NC_004333.2 + 45264 0.69 0.227879
Target:  5'- gCGCGUGGCGCCUu-GGCU-CGCGAa- -3'
miRNA:   3'- -GCGCGCCGCGGGucUCGAcGUGCUcu -5'
17123 5' -62 NC_004333.2 + 20656 0.68 0.258431
Target:  5'- gGCGCuGCGCCaguggcaGGAgGC-GCACGGGAu -3'
miRNA:   3'- gCGCGcCGCGGg------UCU-CGaCGUGCUCU- -5'
17123 5' -62 NC_004333.2 + 8942 0.67 0.292248
Target:  5'- uCGCGcCGGCGCuguCCAucGCgUGCGCGGGc -3'
miRNA:   3'- -GCGC-GCCGCG---GGUcuCG-ACGUGCUCu -5'
17123 5' -62 NC_004333.2 + 45065 0.66 0.314149
Target:  5'- cCGCGCGGCcgcGCCCGGgcaagaaaacGGCgGacuGCGAGGc -3'
miRNA:   3'- -GCGCGCCG---CGGGUC----------UCGaCg--UGCUCU- -5'
17123 5' -62 NC_004333.2 + 25939 0.68 0.239717
Target:  5'- gCGCGCGGCGCgaugccggcggCCAGuacGCgGCGCuGGAa -3'
miRNA:   3'- -GCGCGCCGCG-----------GGUCu--CGaCGUGcUCU- -5'
17123 5' -62 NC_004333.2 + 13971 0.68 0.245826
Target:  5'- --gGCGGCGgCCGGuGC-GCGCGAGc -3'
miRNA:   3'- gcgCGCCGCgGGUCuCGaCGUGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.