Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17123 | 5' | -62 | NC_004333.2 | + | 17828 | 0.66 | 0.353358 |
Target: 5'- cCGCGCGGCGCCgGcuGAauGCUuGCGCa--- -3' miRNA: 3'- -GCGCGCCGCGGgU--CU--CGA-CGUGcucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 19964 | 0.8 | 0.030629 |
Target: 5'- gGCGCGGaugGCCCAGAGCUGCugagcGCGGGc -3' miRNA: 3'- gCGCGCCg--CGGGUCUCGACG-----UGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 32522 | 0.72 | 0.124269 |
Target: 5'- uCGuCGCGGCGCUgaAGGGCgccgaGUACGAGAc -3' miRNA: 3'- -GC-GCGCCGCGGg-UCUCGa----CGUGCUCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 13819 | 0.71 | 0.158264 |
Target: 5'- gCGCGCGGCGUCCuacGcGCUcgacuucaacgGCACGAGc -3' miRNA: 3'- -GCGCGCCGCGGGu--CuCGA-----------CGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 5208 | 0.7 | 0.170897 |
Target: 5'- aCGgGCGGCucGCCCGuGAcggacgacaauguGCUGCGCGAGc -3' miRNA: 3'- -GCgCGCCG--CGGGU-CU-------------CGACGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 47015 | 0.7 | 0.171348 |
Target: 5'- gCGCGCGcCGCCUu-GGCUGCGCGcGAg -3' miRNA: 3'- -GCGCGCcGCGGGucUCGACGUGCuCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 38748 | 0.7 | 0.175921 |
Target: 5'- aGCGCGGCGgCC--AGCUGCuCGAcGAa -3' miRNA: 3'- gCGCGCCGCgGGucUCGACGuGCU-CU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 20577 | 0.7 | 0.190294 |
Target: 5'- gCGCgGCGGCGgCCGGcagcGGUUGCGCGGc- -3' miRNA: 3'- -GCG-CGCCGCgGGUC----UCGACGUGCUcu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 25956 | 0.69 | 0.211054 |
Target: 5'- aGCGCGGCGCUUGGcGCUcGCGCa--- -3' miRNA: 3'- gCGCGCCGCGGGUCuCGA-CGUGcucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 39330 | 0.66 | 0.345246 |
Target: 5'- gCGCGCGuGCGCCUgccGGCcGCuCGGGGu -3' miRNA: 3'- -GCGCGC-CGCGGGuc-UCGaCGuGCUCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 45120 | 0.66 | 0.32172 |
Target: 5'- cCGCGCGGUGUUCAGcGuUUGCGCGc-- -3' miRNA: 3'- -GCGCGCCGCGGGUCuC-GACGUGCucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 17074 | 0.66 | 0.314149 |
Target: 5'- aGCGCGGCGacggcguaugCCGcGAGUUGCGCGu-- -3' miRNA: 3'- gCGCGCCGCg---------GGU-CUCGACGUGCucu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 780 | 0.67 | 0.306713 |
Target: 5'- uCGCcaCGGCGCUCGcGGGCggcgGCACGAu- -3' miRNA: 3'- -GCGc-GCCGCGGGU-CUCGa---CGUGCUcu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 30203 | 0.67 | 0.299413 |
Target: 5'- gGCGgccaaGGCGCgCAGGGCaucuuccaguUGCGCGGGu -3' miRNA: 3'- gCGCg----CCGCGgGUCUCG----------ACGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 40846 | 0.67 | 0.292248 |
Target: 5'- aCGCGUGccuGCGgCCAGGuCUGCGCGAu- -3' miRNA: 3'- -GCGCGC---CGCgGGUCUcGACGUGCUcu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 41745 | 0.66 | 0.353358 |
Target: 5'- gGCGCGggcgacucgcGCGCCgGGcuaugGGuCUGCACGAGc -3' miRNA: 3'- gCGCGC----------CGCGGgUC-----UC-GACGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 13645 | 0.76 | 0.064 |
Target: 5'- uCGCGCGGUaCUCGGgcAGCUGCGCGAGc -3' miRNA: 3'- -GCGCGCCGcGGGUC--UCGACGUGCUCu -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 8650 | 0.72 | 0.131183 |
Target: 5'- gGCGCGGCGCCCGGc-UUGCuCGuGAc -3' miRNA: 3'- gCGCGCCGCGGGUCucGACGuGCuCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 22077 | 0.72 | 0.132608 |
Target: 5'- aGCGCcaggaaagaGGCGCCCAGguuGGCgaccgucaagacgaGCACGAGAg -3' miRNA: 3'- gCGCG---------CCGCGGGUC---UCGa-------------CGUGCUCU- -5' |
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17123 | 5' | -62 | NC_004333.2 | + | 21410 | 0.7 | 0.190294 |
Target: 5'- aGCGCGGCGCCgGaaugggcaaauuGGGCgGCGCaGGAc -3' miRNA: 3'- gCGCGCCGCGGgU------------CUCGaCGUGcUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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