miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17124 3' -56.7 NC_004333.2 + 17701 0.66 0.60479
Target:  5'- cGUGUCgGCcacGGCACCgGGcGCGGCcgGCGu -3'
miRNA:   3'- -CGCAGaCG---UCGUGGaCCuUGUCG--CGC- -5'
17124 3' -56.7 NC_004333.2 + 2007 0.66 0.60479
Target:  5'- cGCGUCgccggUGCGGgcCAgCUGGuGCAGaCGCGu -3'
miRNA:   3'- -CGCAG-----ACGUC--GUgGACCuUGUC-GCGC- -5'
17124 3' -56.7 NC_004333.2 + 20657 0.66 0.60479
Target:  5'- cGCGcCUGCAGaaaCACC----ACGGCGCGa -3'
miRNA:   3'- -CGCaGACGUC---GUGGaccuUGUCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 11313 0.66 0.60038
Target:  5'- cCGUCUgGCAGCACUcgagcgccggcaaGGAGCcGCGCc -3'
miRNA:   3'- cGCAGA-CGUCGUGGa------------CCUUGuCGCGc -5'
17124 3' -56.7 NC_004333.2 + 21789 0.66 0.593774
Target:  5'- uGCGUCg--AGCugCUGGcGCAcGUGCGc -3'
miRNA:   3'- -CGCAGacgUCGugGACCuUGU-CGCGC- -5'
17124 3' -56.7 NC_004333.2 + 43479 0.66 0.582792
Target:  5'- aGCGUCUGCcuGCGC---GGGCGGCuGCGg -3'
miRNA:   3'- -CGCAGACGu-CGUGgacCUUGUCG-CGC- -5'
17124 3' -56.7 NC_004333.2 + 35229 0.66 0.582792
Target:  5'- cGCaaCUGaCAGCGCCU---GCAGUGCGg -3'
miRNA:   3'- -CGcaGAC-GUCGUGGAccuUGUCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 42653 0.66 0.582792
Target:  5'- aGCGUCUcccgucgaGCAGC-CCgc-AACAGCGCc -3'
miRNA:   3'- -CGCAGA--------CGUCGuGGaccUUGUCGCGc -5'
17124 3' -56.7 NC_004333.2 + 46905 0.66 0.582792
Target:  5'- uGUGUucaugCUGCAGCGCC-GcGAGCGcCGCGa -3'
miRNA:   3'- -CGCA-----GACGUCGUGGaC-CUUGUcGCGC- -5'
17124 3' -56.7 NC_004333.2 + 30075 0.66 0.581696
Target:  5'- cGgGUCgaugccGUAGCGCCgacGGAACGcgucgauGCGCGa -3'
miRNA:   3'- -CgCAGa-----CGUCGUGGa--CCUUGU-------CGCGC- -5'
17124 3' -56.7 NC_004333.2 + 47564 0.66 0.571851
Target:  5'- cGCGcCgGcCGGCGCCUcGuuCAGCGCGg -3'
miRNA:   3'- -CGCaGaC-GUCGUGGAcCuuGUCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 9520 0.66 0.571851
Target:  5'- cGCGcCUGguGCGCa-GGAcggcgaaccggACGGCGUGc -3'
miRNA:   3'- -CGCaGACguCGUGgaCCU-----------UGUCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 45107 0.66 0.56096
Target:  5'- aGCGUUUGCgcgccgccAGCGCCacgcgcGGucgagcggccgGACAGCGCGc -3'
miRNA:   3'- -CGCAGACG--------UCGUGGa-----CC-----------UUGUCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 46975 0.67 0.550126
Target:  5'- cGCGgcgCUGCAGCAU---GAACAGCagGCGc -3'
miRNA:   3'- -CGCa--GACGUCGUGgacCUUGUCG--CGC- -5'
17124 3' -56.7 NC_004333.2 + 17383 0.67 0.550126
Target:  5'- aCGUCgaGCAGCGCaucGAgcugcucgcGCAGCGCGg -3'
miRNA:   3'- cGCAGa-CGUCGUGgacCU---------UGUCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 1926 0.67 0.550126
Target:  5'- cGCGUCUGCAcCAgCUGGcccgcaccGGCGaCGCGg -3'
miRNA:   3'- -CGCAGACGUcGUgGACC--------UUGUcGCGC- -5'
17124 3' -56.7 NC_004333.2 + 12028 0.67 0.549046
Target:  5'- aCG-CUGCGuGCaaggcgcucgaccGCCUGGAGC-GCGCGu -3'
miRNA:   3'- cGCaGACGU-CG-------------UGGACCUUGuCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 41772 0.67 0.539358
Target:  5'- uGgGUCUGCAcgaGCgaGGAAguGCGCa -3'
miRNA:   3'- -CgCAGACGUcg-UGgaCCUUguCGCGc -5'
17124 3' -56.7 NC_004333.2 + 19568 0.67 0.528662
Target:  5'- -gGUCggcGCGGCACaaggGGAAUcGCGCGc -3'
miRNA:   3'- cgCAGa--CGUCGUGga--CCUUGuCGCGC- -5'
17124 3' -56.7 NC_004333.2 + 2941 0.67 0.528662
Target:  5'- cGUGccgCUGUAGC-CCUGcAGCuGCGCGa -3'
miRNA:   3'- -CGCa--GACGUCGuGGACcUUGuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.