miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17124 5' -57.9 NC_004333.2 + 39335 0.66 0.539108
Target:  5'- aUCGCG-CgCGCgugCGcCUGCCGGCc- -3'
miRNA:   3'- aAGUGCuG-GCGaa-GCuGACGGCCGcu -5'
17124 5' -57.9 NC_004333.2 + 37184 0.66 0.539108
Target:  5'- -aCACG-CCGCUcaCGACgcgcGCCGGUGc -3'
miRNA:   3'- aaGUGCuGGCGAa-GCUGa---CGGCCGCu -5'
17124 5' -57.9 NC_004333.2 + 11201 0.66 0.539108
Target:  5'- cUCGCGAcCCGCgcgcacgugaUUCGGgcgcggcuccUUGCCGGCGc -3'
miRNA:   3'- aAGUGCU-GGCG----------AAGCU----------GACGGCCGCu -5'
17124 5' -57.9 NC_004333.2 + 17600 0.66 0.538044
Target:  5'- -gCGCGAUCGCUUCGgacagugcgaccgGCUGCagcaGGuCGGu -3'
miRNA:   3'- aaGUGCUGGCGAAGC-------------UGACGg---CC-GCU- -5'
17124 5' -57.9 NC_004333.2 + 25806 0.66 0.528497
Target:  5'- cUUCACG-CCGac-CGGCcugcagcugGCCGGCGAg -3'
miRNA:   3'- -AAGUGCuGGCgaaGCUGa--------CGGCCGCU- -5'
17124 5' -57.9 NC_004333.2 + 10252 0.66 0.528497
Target:  5'- -gCGCGACUGCaucuugUCGACgGCUgaGGUGAa -3'
miRNA:   3'- aaGUGCUGGCGa-----AGCUGaCGG--CCGCU- -5'
17124 5' -57.9 NC_004333.2 + 25557 0.66 0.517963
Target:  5'- cUUCAUGACaCGCaaccCGGCUGUCGccGCGAc -3'
miRNA:   3'- -AAGUGCUG-GCGaa--GCUGACGGC--CGCU- -5'
17124 5' -57.9 NC_004333.2 + 38469 0.66 0.517963
Target:  5'- gUCuuGACCGUggcCGGCgucacGCCGGCGc -3'
miRNA:   3'- aAGugCUGGCGaa-GCUGa----CGGCCGCu -5'
17124 5' -57.9 NC_004333.2 + 30942 0.66 0.517963
Target:  5'- aUCACGuCCGg--CGAUacGCCGGCGGc -3'
miRNA:   3'- aAGUGCuGGCgaaGCUGa-CGGCCGCU- -5'
17124 5' -57.9 NC_004333.2 + 15287 0.66 0.517963
Target:  5'- -gUACGGCCGuCUgacCGgccuGCUGCCGGCc- -3'
miRNA:   3'- aaGUGCUGGC-GAa--GC----UGACGGCCGcu -5'
17124 5' -57.9 NC_004333.2 + 31349 0.66 0.507514
Target:  5'- cUUCAUcaGACCGCUgccgagCGACgcaGCCGcGCGu -3'
miRNA:   3'- -AAGUG--CUGGCGAa-----GCUGa--CGGC-CGCu -5'
17124 5' -57.9 NC_004333.2 + 20493 0.66 0.497156
Target:  5'- --gGCGGCUGCcgCGcaaccGCUGCCGGCc- -3'
miRNA:   3'- aagUGCUGGCGaaGC-----UGACGGCCGcu -5'
17124 5' -57.9 NC_004333.2 + 47471 0.66 0.497156
Target:  5'- -aCGCGcCgGCggCGACUGCCGcGCuGAa -3'
miRNA:   3'- aaGUGCuGgCGaaGCUGACGGC-CG-CU- -5'
17124 5' -57.9 NC_004333.2 + 2981 0.66 0.493039
Target:  5'- gUCACGACCGCUgcgcagcacgucUCGGCcaacaucagccucGCCGcuGCGAc -3'
miRNA:   3'- aAGUGCUGGCGA------------AGCUGa------------CGGC--CGCU- -5'
17124 5' -57.9 NC_004333.2 + 25298 0.67 0.486894
Target:  5'- gUCGCaACCGggcCGAC-GCCGGCGAc -3'
miRNA:   3'- aAGUGcUGGCgaaGCUGaCGGCCGCU- -5'
17124 5' -57.9 NC_004333.2 + 45015 0.67 0.486894
Target:  5'- gUC-CGGCCGC-UCGACcgcgcguggcGCUGGCGGc -3'
miRNA:   3'- aAGuGCUGGCGaAGCUGa---------CGGCCGCU- -5'
17124 5' -57.9 NC_004333.2 + 41035 0.67 0.486894
Target:  5'- --aACGGCCcgaaacGUUUCGcCUGCCGuGCGAc -3'
miRNA:   3'- aagUGCUGG------CGAAGCuGACGGC-CGCU- -5'
17124 5' -57.9 NC_004333.2 + 26444 0.67 0.486894
Target:  5'- aUCACGACCGaCggcagCGACgucaucaacgUGCgUGGCGAg -3'
miRNA:   3'- aAGUGCUGGC-Gaa---GCUG----------ACG-GCCGCU- -5'
17124 5' -57.9 NC_004333.2 + 37850 0.67 0.486894
Target:  5'- -aCGCGAUCGCgUCcgGACUcgagcccgagGCCGGUGAg -3'
miRNA:   3'- aaGUGCUGGCGaAG--CUGA----------CGGCCGCU- -5'
17124 5' -57.9 NC_004333.2 + 40719 0.67 0.476732
Target:  5'- gUUCGuCGGCCGCUUCGGCcugauaccaGCgUGGCGu -3'
miRNA:   3'- -AAGU-GCUGGCGAAGCUGa--------CG-GCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.