miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17125 5' -60.2 NC_004333.2 + 30030 0.66 0.416492
Target:  5'- cGCGGCC-GCGCuCGGCaCGcgcUUUUCGcGCa -3'
miRNA:   3'- -CGCCGGaCGCG-GCCG-GU---AAAGGU-CGa -5'
17125 5' -60.2 NC_004333.2 + 33065 0.66 0.416492
Target:  5'- aGCGGUau-CGCCGGaCUcgcgUUCCAGCa -3'
miRNA:   3'- -CGCCGgacGCGGCC-GGua--AAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 38777 0.66 0.416492
Target:  5'- -aGGCgaGCGCCGGCgGcugcgggaaUUUCAGCg -3'
miRNA:   3'- cgCCGgaCGCGGCCGgUa--------AAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 43635 0.66 0.407278
Target:  5'- aCGGCCcgUGCGuCCGGCCugcaccaCCAGg- -3'
miRNA:   3'- cGCCGG--ACGC-GGCCGGuaaa---GGUCga -5'
17125 5' -60.2 NC_004333.2 + 1452 0.66 0.406363
Target:  5'- cGCGGCUucaUGCGUUcguucaaGGCCGccgCCGGCa -3'
miRNA:   3'- -CGCCGG---ACGCGG-------CCGGUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 9426 0.66 0.398192
Target:  5'- uGCGGgCUGCGCaC-GCCG--UCCGGUUc -3'
miRNA:   3'- -CGCCgGACGCG-GcCGGUaaAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 41635 0.66 0.398192
Target:  5'- gGCGGCagauugucggGCGCgggcugCGGCCGUacgCCGGCa -3'
miRNA:   3'- -CGCCGga--------CGCG------GCCGGUAaa-GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 10669 0.66 0.398192
Target:  5'- aCGGUC-GCGCCGGCCgg-UgCAcGCUa -3'
miRNA:   3'- cGCCGGaCGCGGCCGGuaaAgGU-CGA- -5'
17125 5' -60.2 NC_004333.2 + 14239 0.66 0.398192
Target:  5'- aCGGCgUGCGCgCGcGCCucUUUCgAGCc -3'
miRNA:   3'- cGCCGgACGCG-GC-CGGu-AAAGgUCGa -5'
17125 5' -60.2 NC_004333.2 + 21975 0.66 0.389237
Target:  5'- aCGGCCcGCacuGCgGGCCGUUUUCuuuGCg -3'
miRNA:   3'- cGCCGGaCG---CGgCCGGUAAAGGu--CGa -5'
17125 5' -60.2 NC_004333.2 + 2758 0.66 0.388349
Target:  5'- cGCGGCCgccGUGCCGGUCGcgUUCgucacgaccgugaAGCg -3'
miRNA:   3'- -CGCCGGa--CGCGGCCGGUaaAGG-------------UCGa -5'
17125 5' -60.2 NC_004333.2 + 30468 0.66 0.380416
Target:  5'- uCGGUCcgGCGCCGGUCGcuucgacgUUCGGCa -3'
miRNA:   3'- cGCCGGa-CGCGGCCGGUaa------AGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 29979 0.66 0.371729
Target:  5'- aGCGGCCgaggaugccGCGCgCGGCCcgaucgCgCAGCg -3'
miRNA:   3'- -CGCCGGa--------CGCG-GCCGGuaaa--G-GUCGa -5'
17125 5' -60.2 NC_004333.2 + 13958 0.66 0.371729
Target:  5'- cGCaGCCcGUGCCGGCCGacuucgCgCGGCg -3'
miRNA:   3'- -CGcCGGaCGCGGCCGGUaaa---G-GUCGa -5'
17125 5' -60.2 NC_004333.2 + 435 0.67 0.366582
Target:  5'- uCGGCCUGCaGCuguucaaagcgccgaCGGgCAUUUCgGGCg -3'
miRNA:   3'- cGCCGGACG-CG---------------GCCgGUAAAGgUCGa -5'
17125 5' -60.2 NC_004333.2 + 32753 0.67 0.363178
Target:  5'- cGCaGGUcgCUGcCGCCGGCCAUaagCgCGGCa -3'
miRNA:   3'- -CG-CCG--GAC-GCGGCCGGUAaa-G-GUCGa -5'
17125 5' -60.2 NC_004333.2 + 36162 0.67 0.363178
Target:  5'- cGUGGCUggcgcgcaGCGCCGcGUCAcgggCCAGCUc -3'
miRNA:   3'- -CGCCGGa-------CGCGGC-CGGUaaa-GGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 18524 0.67 0.36233
Target:  5'- aGCGGCCUucGCaGCCGGCggcaacccgggugCGgcagCCGGCg -3'
miRNA:   3'- -CGCCGGA--CG-CGGCCG-------------GUaaa-GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 10874 0.67 0.352267
Target:  5'- cGCGGUCUGUGCgucugccaaauaguCGGCa--UUCCAGUc -3'
miRNA:   3'- -CGCCGGACGCG--------------GCCGguaAAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 28939 0.67 0.34731
Target:  5'- cGCGGCacgagcgcuugagcGCGCCGGCUAcgaacgcagCCGGCa -3'
miRNA:   3'- -CGCCGga------------CGCGGCCGGUaaa------GGUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.