Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17125 | 5' | -60.2 | NC_004333.2 | + | 30030 | 0.66 | 0.416492 |
Target: 5'- cGCGGCC-GCGCuCGGCaCGcgcUUUUCGcGCa -3' miRNA: 3'- -CGCCGGaCGCG-GCCG-GU---AAAGGU-CGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 14239 | 0.66 | 0.398192 |
Target: 5'- aCGGCgUGCGCgCGcGCCucUUUCgAGCc -3' miRNA: 3'- cGCCGgACGCG-GC-CGGu-AAAGgUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 9426 | 0.66 | 0.398192 |
Target: 5'- uGCGGgCUGCGCaC-GCCG--UCCGGUUc -3' miRNA: 3'- -CGCCgGACGCG-GcCGGUaaAGGUCGA- -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 10669 | 0.66 | 0.398192 |
Target: 5'- aCGGUC-GCGCCGGCCgg-UgCAcGCUa -3' miRNA: 3'- cGCCGGaCGCGGCCGGuaaAgGU-CGA- -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 2758 | 0.66 | 0.388349 |
Target: 5'- cGCGGCCgccGUGCCGGUCGcgUUCgucacgaccgugaAGCg -3' miRNA: 3'- -CGCCGGa--CGCGGCCGGUaaAGG-------------UCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 43635 | 0.66 | 0.407278 |
Target: 5'- aCGGCCcgUGCGuCCGGCCugcaccaCCAGg- -3' miRNA: 3'- cGCCGG--ACGC-GGCCGGuaaa---GGUCga -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 41635 | 0.66 | 0.398192 |
Target: 5'- gGCGGCagauugucggGCGCgggcugCGGCCGUacgCCGGCa -3' miRNA: 3'- -CGCCGga--------CGCG------GCCGGUAaa-GGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 21975 | 0.66 | 0.389237 |
Target: 5'- aCGGCCcGCacuGCgGGCCGUUUUCuuuGCg -3' miRNA: 3'- cGCCGGaCG---CGgCCGGUAAAGGu--CGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 29979 | 0.66 | 0.371729 |
Target: 5'- aGCGGCCgaggaugccGCGCgCGGCCcgaucgCgCAGCg -3' miRNA: 3'- -CGCCGGa--------CGCG-GCCGGuaaa--G-GUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 13958 | 0.66 | 0.371729 |
Target: 5'- cGCaGCCcGUGCCGGCCGacuucgCgCGGCg -3' miRNA: 3'- -CGcCGGaCGCGGCCGGUaaa---G-GUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 30468 | 0.66 | 0.380416 |
Target: 5'- uCGGUCcgGCGCCGGUCGcuucgacgUUCGGCa -3' miRNA: 3'- cGCCGGa-CGCGGCCGGUaa------AGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 33065 | 0.66 | 0.416492 |
Target: 5'- aGCGGUau-CGCCGGaCUcgcgUUCCAGCa -3' miRNA: 3'- -CGCCGgacGCGGCC-GGua--AAGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 38777 | 0.66 | 0.416492 |
Target: 5'- -aGGCgaGCGCCGGCgGcugcgggaaUUUCAGCg -3' miRNA: 3'- cgCCGgaCGCGGCCGgUa--------AAGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 1452 | 0.66 | 0.406363 |
Target: 5'- cGCGGCUucaUGCGUUcguucaaGGCCGccgCCGGCa -3' miRNA: 3'- -CGCCGG---ACGCGG-------CCGGUaaaGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 23660 | 0.67 | 0.346489 |
Target: 5'- gGCGGaacGcCGCCGGCC---UCCGGCg -3' miRNA: 3'- -CGCCggaC-GCGGCCGGuaaAGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 12168 | 0.67 | 0.346489 |
Target: 5'- uCGuGUCUcGCGCCGaGCCGcuucUUCCGGCg -3' miRNA: 3'- cGC-CGGA-CGCGGC-CGGUa---AAGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 20581 | 0.67 | 0.330357 |
Target: 5'- aGCGGCgCgGCGgCGGCCGg---CAGCg -3' miRNA: 3'- -CGCCG-GaCGCgGCCGGUaaagGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 9047 | 0.67 | 0.330357 |
Target: 5'- cGCcGCC-GCGCaCGGCCGcacgaUCCAGCc -3' miRNA: 3'- -CGcCGGaCGCG-GCCGGUaa---AGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 22255 | 0.67 | 0.338353 |
Target: 5'- aGCcGCCgaaccGcCGCCGGCCGccgCCGGCg -3' miRNA: 3'- -CGcCGGa----C-GCGGCCGGUaaaGGUCGa -5' |
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17125 | 5' | -60.2 | NC_004333.2 | + | 3069 | 0.67 | 0.346489 |
Target: 5'- cGCGGCggacGCGCCGGCgAgcgUCUacGGCa -3' miRNA: 3'- -CGCCGga--CGCGGCCGgUaa-AGG--UCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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