miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17125 5' -60.2 NC_004333.2 + 7847 1.09 0.000258
Target:  5'- cGCGGCCUGCGCCGGCCAUUUCCAGCUc -3'
miRNA:   3'- -CGCCGGACGCGGCCGGUAAAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 20451 0.78 0.055559
Target:  5'- cGCGaaGCCUGCGCCGGUCGUgacgcagCCGGUUa -3'
miRNA:   3'- -CGC--CGGACGCGGCCGGUAaa-----GGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 31294 0.76 0.082317
Target:  5'- cGCGGCCgucGCGCCGGCaugaccaaCCGGCa -3'
miRNA:   3'- -CGCCGGa--CGCGGCCGguaaa---GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 25795 0.75 0.103653
Target:  5'- cCGGCCUGCaGCUGGCCGg--CgAGCa -3'
miRNA:   3'- cGCCGGACG-CGGCCGGUaaaGgUCGa -5'
17125 5' -60.2 NC_004333.2 + 873 0.74 0.115861
Target:  5'- uCGGuCCUGCGCCGGCgA---CCGGCa -3'
miRNA:   3'- cGCC-GGACGCGGCCGgUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 19637 0.74 0.122457
Target:  5'- cGCGGCC-GaCGCUGGCCGUcaaCAGCUc -3'
miRNA:   3'- -CGCCGGaC-GCGGCCGGUAaagGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 27450 0.73 0.125884
Target:  5'- aCGGCCgucGCGCCGGgCAcUUCCAcgGCUa -3'
miRNA:   3'- cGCCGGa--CGCGGCCgGUaAAGGU--CGA- -5'
17125 5' -60.2 NC_004333.2 + 15273 0.73 0.133006
Target:  5'- cCGGCCUGCuGCCGGCCGUgcggauuGCg -3'
miRNA:   3'- cGCCGGACG-CGGCCGGUAaaggu--CGa -5'
17125 5' -60.2 NC_004333.2 + 23236 0.73 0.142043
Target:  5'- gGCGGCgaacGCGCCGGUCGUguuguucgugaccgUCCAGCc -3'
miRNA:   3'- -CGCCGga--CGCGGCCGGUAa-------------AGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 32851 0.73 0.144388
Target:  5'- cGCGGCCUGCucgaGUCGGUCGaugUUgcgCCAGCc -3'
miRNA:   3'- -CGCCGGACG----CGGCCGGU---AAa--GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 17530 0.72 0.148375
Target:  5'- gGCGGCCUucGCGuuGcGCCAcaUCCGGUg -3'
miRNA:   3'- -CGCCGGA--CGCggC-CGGUaaAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 28976 0.72 0.152463
Target:  5'- aCGGCaaguaUGCGCCGGCCugcgCCgAGCg -3'
miRNA:   3'- cGCCGg----ACGCGGCCGGuaaaGG-UCGa -5'
17125 5' -60.2 NC_004333.2 + 2014 0.72 0.165345
Target:  5'- gGCGGCCcGCGUC-GCCGgugcgggCCAGCUg -3'
miRNA:   3'- -CGCCGGaCGCGGcCGGUaaa----GGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 5037 0.72 0.165345
Target:  5'- gGCGGCCagGCgGCCGGCUGUUggccgacgUCGGCg -3'
miRNA:   3'- -CGCCGGa-CG-CGGCCGGUAAa-------GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 9642 0.72 0.165345
Target:  5'- gGCGcGCCUGCGcCCGGCUguucGUUUUCGGg- -3'
miRNA:   3'- -CGC-CGGACGC-GGCCGG----UAAAGGUCga -5'
17125 5' -60.2 NC_004333.2 + 21498 0.72 0.169852
Target:  5'- cGCGuCCUGCGCCGcccaauuuGCCcaUUCCGGCg -3'
miRNA:   3'- -CGCcGGACGCGGC--------CGGuaAAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 30506 0.71 0.179196
Target:  5'- uGCGGCCgaccagGCuGCCGGCCAgcuugUCCcauccccacucgAGCg -3'
miRNA:   3'- -CGCCGGa-----CG-CGGCCGGUaa---AGG------------UCGa -5'
17125 5' -60.2 NC_004333.2 + 20817 0.71 0.179196
Target:  5'- cGCaGCC-GCGUCGGCgAUgUCCGGCa -3'
miRNA:   3'- -CGcCGGaCGCGGCCGgUAaAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 41894 0.71 0.184037
Target:  5'- cGCGGCCggGCGCCGucguGCCG--UCgGGCa -3'
miRNA:   3'- -CGCCGGa-CGCGGC----CGGUaaAGgUCGa -5'
17125 5' -60.2 NC_004333.2 + 47569 0.71 0.188994
Target:  5'- cUGGUC-GCGCCGGCCGgcgccucgUUCAGCg -3'
miRNA:   3'- cGCCGGaCGCGGCCGGUaa------AGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.