miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17125 5' -60.2 NC_004333.2 + 23660 0.67 0.346489
Target:  5'- gGCGGaacGcCGCCGGCC---UCCGGCg -3'
miRNA:   3'- -CGCCggaC-GCGGCCGGuaaAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 12168 0.67 0.346489
Target:  5'- uCGuGUCUcGCGCCGaGCCGcuucUUCCGGCg -3'
miRNA:   3'- cGC-CGGA-CGCGGC-CGGUa---AAGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 3069 0.67 0.346489
Target:  5'- cGCGGCggacGCGCCGGCgAgcgUCUacGGCa -3'
miRNA:   3'- -CGCCGga--CGCGGCCGgUaa-AGG--UCGa -5'
17125 5' -60.2 NC_004333.2 + 22255 0.67 0.338353
Target:  5'- aGCcGCCgaaccGcCGCCGGCCGccgCCGGCg -3'
miRNA:   3'- -CGcCGGa----C-GCGGCCGGUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 20581 0.67 0.330357
Target:  5'- aGCGGCgCgGCGgCGGCCGg---CAGCg -3'
miRNA:   3'- -CGCCG-GaCGCgGCCGGUaaagGUCGa -5'
17125 5' -60.2 NC_004333.2 + 9047 0.67 0.330357
Target:  5'- cGCcGCC-GCGCaCGGCCGcacgaUCCAGCc -3'
miRNA:   3'- -CGcCGGaCGCG-GCCGGUaa---AGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 44899 0.67 0.322501
Target:  5'- cGCGGCCaGCGUCGuCCAUgUCCucgccgAGCg -3'
miRNA:   3'- -CGCCGGaCGCGGCcGGUAaAGG------UCGa -5'
17125 5' -60.2 NC_004333.2 + 3275 0.67 0.322501
Target:  5'- gGCGGC--GCGCCgGGCCGgcucaCCGGCc -3'
miRNA:   3'- -CGCCGgaCGCGG-CCGGUaaa--GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 17361 0.68 0.314785
Target:  5'- -aGGaCgCUGCGCCGGCCGgcgUUCacgucgaaGGCa -3'
miRNA:   3'- cgCC-G-GACGCGGCCGGUa--AAGg-------UCGa -5'
17125 5' -60.2 NC_004333.2 + 2086 0.68 0.314785
Target:  5'- uGCGGCCgUGaCGUCGGgCAUcauccgcgCCGGCg -3'
miRNA:   3'- -CGCCGG-AC-GCGGCCgGUAaa------GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 33292 0.68 0.314785
Target:  5'- cGCGcGCgUUGCGUCGGCCGcaUCgAGCc -3'
miRNA:   3'- -CGC-CG-GACGCGGCCGGUaaAGgUCGa -5'
17125 5' -60.2 NC_004333.2 + 5589 0.68 0.314785
Target:  5'- uGCGGCCaucgggcaUGCGCacguucaGGCCGUgcggCAGCUu -3'
miRNA:   3'- -CGCCGG--------ACGCGg------CCGGUAaag-GUCGA- -5'
17125 5' -60.2 NC_004333.2 + 20539 0.68 0.30721
Target:  5'- gGCGGCCUGUaacaugGCCGcGCCGcugaucgUCGGCg -3'
miRNA:   3'- -CGCCGGACG------CGGC-CGGUaaa----GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 2764 0.68 0.30721
Target:  5'- uCGGCCUGU--CGGCCGccgCCGGCg -3'
miRNA:   3'- cGCCGGACGcgGCCGGUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 46018 0.68 0.297571
Target:  5'- aCGGCCUGCGCUGGCguaaggauuaacgUUguGCUa -3'
miRNA:   3'- cGCCGGACGCGGCCGguaa---------AGguCGA- -5'
17125 5' -60.2 NC_004333.2 + 29973 0.68 0.292479
Target:  5'- cGCGGCC-GCGCUG-CCA---CCGGCg -3'
miRNA:   3'- -CGCCGGaCGCGGCcGGUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 18622 0.68 0.292479
Target:  5'- cGCcGCC-GCGCCGGCUgccgcacccggGUUgccgCCGGCUg -3'
miRNA:   3'- -CGcCGGaCGCGGCCGG-----------UAAa---GGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 38395 0.68 0.292479
Target:  5'- cCGGCgUGaCGCCGGCCAcggUCaagaCGGCg -3'
miRNA:   3'- cGCCGgAC-GCGGCCGGUaa-AG----GUCGa -5'
17125 5' -60.2 NC_004333.2 + 31410 0.68 0.285324
Target:  5'- aGCGGUCUGaugaaGCUGGCCGgcauugCgGGCg -3'
miRNA:   3'- -CGCCGGACg----CGGCCGGUaaa---GgUCGa -5'
17125 5' -60.2 NC_004333.2 + 47478 0.68 0.281097
Target:  5'- gGCGGCgacugccgcgcugaaCgagGCGCCGGCCGgcgcgaCCAGUa -3'
miRNA:   3'- -CGCCG---------------Ga--CGCGGCCGGUaaa---GGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.