miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17125 5' -60.2 NC_004333.2 + 435 0.67 0.366582
Target:  5'- uCGGCCUGCaGCuguucaaagcgccgaCGGgCAUUUCgGGCg -3'
miRNA:   3'- cGCCGGACG-CG---------------GCCgGUAAAGgUCGa -5'
17125 5' -60.2 NC_004333.2 + 873 0.74 0.115861
Target:  5'- uCGGuCCUGCGCCGGCgA---CCGGCa -3'
miRNA:   3'- cGCC-GGACGCGGCCGgUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 1452 0.66 0.406363
Target:  5'- cGCGGCUucaUGCGUUcguucaaGGCCGccgCCGGCa -3'
miRNA:   3'- -CGCCGG---ACGCGG-------CCGGUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 2014 0.72 0.165345
Target:  5'- gGCGGCCcGCGUC-GCCGgugcgggCCAGCUg -3'
miRNA:   3'- -CGCCGGaCGCGGcCGGUaaa----GGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 2086 0.68 0.314785
Target:  5'- uGCGGCCgUGaCGUCGGgCAUcauccgcgCCGGCg -3'
miRNA:   3'- -CGCCGG-AC-GCGGCCgGUAaa------GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 2758 0.66 0.388349
Target:  5'- cGCGGCCgccGUGCCGGUCGcgUUCgucacgaccgugaAGCg -3'
miRNA:   3'- -CGCCGGa--CGCGGCCGGUaaAGG-------------UCGa -5'
17125 5' -60.2 NC_004333.2 + 2764 0.68 0.30721
Target:  5'- uCGGCCUGU--CGGCCGccgCCGGCg -3'
miRNA:   3'- cGCCGGACGcgGCCGGUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 3069 0.67 0.346489
Target:  5'- cGCGGCggacGCGCCGGCgAgcgUCUacGGCa -3'
miRNA:   3'- -CGCCGga--CGCGGCCGgUaa-AGG--UCGa -5'
17125 5' -60.2 NC_004333.2 + 3275 0.67 0.322501
Target:  5'- gGCGGC--GCGCCgGGCCGgcucaCCGGCc -3'
miRNA:   3'- -CGCCGgaCGCGG-CCGGUaaa--GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 4604 0.71 0.199259
Target:  5'- aCGGCC-GCGCCGGCaGUUUCgAGgUa -3'
miRNA:   3'- cGCCGGaCGCGGCCGgUAAAGgUCgA- -5'
17125 5' -60.2 NC_004333.2 + 5037 0.72 0.165345
Target:  5'- gGCGGCCagGCgGCCGGCUGUUggccgacgUCGGCg -3'
miRNA:   3'- -CGCCGGa-CG-CGGCCGGUAAa-------GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 5589 0.68 0.314785
Target:  5'- uGCGGCCaucgggcaUGCGCacguucaGGCCGUgcggCAGCUu -3'
miRNA:   3'- -CGCCGG--------ACGCGg------CCGGUAaag-GUCGA- -5'
17125 5' -60.2 NC_004333.2 + 7847 1.09 0.000258
Target:  5'- cGCGGCCUGCGCCGGCCAUUUCCAGCUc -3'
miRNA:   3'- -CGCCGGACGCGGCCGGUAAAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 8931 0.69 0.251612
Target:  5'- cGCGGCUUcguucGCGCCGGCgCug-UCCAucGCg -3'
miRNA:   3'- -CGCCGGA-----CGCGGCCG-GuaaAGGU--CGa -5'
17125 5' -60.2 NC_004333.2 + 9047 0.67 0.330357
Target:  5'- cGCcGCC-GCGCaCGGCCGcacgaUCCAGCc -3'
miRNA:   3'- -CGcCGGaCGCG-GCCGGUaa---AGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 9294 0.69 0.271428
Target:  5'- aCGGUCggguuuucacCGCCGGCCGggUUCAGCUc -3'
miRNA:   3'- cGCCGGac--------GCGGCCGGUaaAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 9426 0.66 0.398192
Target:  5'- uGCGGgCUGCGCaC-GCCG--UCCGGUUc -3'
miRNA:   3'- -CGCCgGACGCG-GcCGGUaaAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 9642 0.72 0.165345
Target:  5'- gGCGcGCCUGCGcCCGGCUguucGUUUUCGGg- -3'
miRNA:   3'- -CGC-CGGACGC-GGCCGG----UAAAGGUCga -5'
17125 5' -60.2 NC_004333.2 + 10669 0.66 0.398192
Target:  5'- aCGGUC-GCGCCGGCCgg-UgCAcGCUa -3'
miRNA:   3'- cGCCGGaCGCGGCCGGuaaAgGU-CGA- -5'
17125 5' -60.2 NC_004333.2 + 10874 0.67 0.352267
Target:  5'- cGCGGUCUGUGCgucugccaaauaguCGGCa--UUCCAGUc -3'
miRNA:   3'- -CGCCGGACGCG--------------GCCGguaAAGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.