miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17125 5' -60.2 NC_004333.2 + 7847 1.09 0.000258
Target:  5'- cGCGGCCUGCGCCGGCCAUUUCCAGCUc -3'
miRNA:   3'- -CGCCGGACGCGGCCGGUAAAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 38395 0.68 0.292479
Target:  5'- cCGGCgUGaCGCCGGCCAcggUCaagaCGGCg -3'
miRNA:   3'- cGCCGgAC-GCGGCCGGUaa-AG----GUCGa -5'
17125 5' -60.2 NC_004333.2 + 46018 0.68 0.297571
Target:  5'- aCGGCCUGCGCUGGCguaaggauuaacgUUguGCUa -3'
miRNA:   3'- cGCCGGACGCGGCCGguaa---------AGguCGA- -5'
17125 5' -60.2 NC_004333.2 + 43635 0.66 0.407278
Target:  5'- aCGGCCcgUGCGuCCGGCCugcaccaCCAGg- -3'
miRNA:   3'- cGCCGG--ACGC-GGCCGGuaaa---GGUCga -5'
17125 5' -60.2 NC_004333.2 + 32851 0.73 0.144388
Target:  5'- cGCGGCCUGCucgaGUCGGUCGaugUUgcgCCAGCc -3'
miRNA:   3'- -CGCCGGACG----CGGCCGGU---AAa--GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 5037 0.72 0.165345
Target:  5'- gGCGGCCagGCgGCCGGCUGUUggccgacgUCGGCg -3'
miRNA:   3'- -CGCCGGa-CG-CGGCCGGUAAa-------GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 30506 0.71 0.179196
Target:  5'- uGCGGCCgaccagGCuGCCGGCCAgcuugUCCcauccccacucgAGCg -3'
miRNA:   3'- -CGCCGGa-----CG-CGGCCGGUaa---AGG------------UCGa -5'
17125 5' -60.2 NC_004333.2 + 4604 0.71 0.199259
Target:  5'- aCGGCC-GCGCCGGCaGUUUCgAGgUa -3'
miRNA:   3'- cGCCGGaCGCGGCCGgUAAAGgUCgA- -5'
17125 5' -60.2 NC_004333.2 + 8931 0.69 0.251612
Target:  5'- cGCGGCUUcguucGCGCCGGCgCug-UCCAucGCg -3'
miRNA:   3'- -CGCCGGA-----CGCGGCCG-GuaaAGGU--CGa -5'
17125 5' -60.2 NC_004333.2 + 47478 0.68 0.281097
Target:  5'- gGCGGCgacugccgcgcugaaCgagGCGCCGGCCGgcgcgaCCAGUa -3'
miRNA:   3'- -CGCCG---------------Ga--CGCGGCCGGUaaa---GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 9294 0.69 0.271428
Target:  5'- aCGGUCggguuuucacCGCCGGCCGggUUCAGCUc -3'
miRNA:   3'- cGCCGGac--------GCGGCCGGUaaAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 36840 0.7 0.233003
Target:  5'- aCGGCCauCGCCGGCCGcuaucaacCCAGCa -3'
miRNA:   3'- cGCCGGacGCGGCCGGUaaa-----GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 20451 0.78 0.055559
Target:  5'- cGCGaaGCCUGCGCCGGUCGUgacgcagCCGGUUa -3'
miRNA:   3'- -CGC--CGGACGCGGCCGGUAaa-----GGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 24492 0.68 0.278307
Target:  5'- uGCGGCCgagauaGUCGGUCAUUU-CAGCa -3'
miRNA:   3'- -CGCCGGacg---CGGCCGGUAAAgGUCGa -5'
17125 5' -60.2 NC_004333.2 + 19637 0.74 0.122457
Target:  5'- cGCGGCC-GaCGCUGGCCGUcaaCAGCUc -3'
miRNA:   3'- -CGCCGGaC-GCGGCCGGUAaagGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 25718 0.7 0.210007
Target:  5'- aUGGCUUGCucGCCGGCCAgcugcaggCCGGUc -3'
miRNA:   3'- cGCCGGACG--CGGCCGGUaaa-----GGUCGa -5'
17125 5' -60.2 NC_004333.2 + 11816 0.68 0.278307
Target:  5'- cGCGGCCaucaGCGCgaCGGCgCGc-UCCAGCUu -3'
miRNA:   3'- -CGCCGGa---CGCG--GCCG-GUaaAGGUCGA- -5'
17125 5' -60.2 NC_004333.2 + 29973 0.68 0.292479
Target:  5'- cGCGGCC-GCGCUG-CCA---CCGGCg -3'
miRNA:   3'- -CGCCGGaCGCGGCcGGUaaaGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 23236 0.73 0.142043
Target:  5'- gGCGGCgaacGCGCCGGUCGUguuguucgugaccgUCCAGCc -3'
miRNA:   3'- -CGCCGga--CGCGGCCGGUAa-------------AGGUCGa -5'
17125 5' -60.2 NC_004333.2 + 9642 0.72 0.165345
Target:  5'- gGCGcGCCUGCGcCCGGCUguucGUUUUCGGg- -3'
miRNA:   3'- -CGC-CGGACGC-GGCCGG----UAAAGGUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.