miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17126 5' -58.8 NC_004333.2 + 13917 0.65 0.532766
Target:  5'- gCUGCCGugGc-GAUCgugGCCgcugccgccagcgUGGCCGCc -3'
miRNA:   3'- -GGCGGCugCaaCUAGa--CGG-------------GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 10942 0.66 0.523416
Target:  5'- gCGCCGGCGU---UCUuCCCGcGCgGCg -3'
miRNA:   3'- gGCGGCUGCAacuAGAcGGGC-CGgUG- -5'
17126 5' -58.8 NC_004333.2 + 7718 0.66 0.520314
Target:  5'- gCGCgGAcagcgacggauCGUUGAUCagGCcguaguucucgaggCCGGCCACg -3'
miRNA:   3'- gGCGgCU-----------GCAACUAGa-CG--------------GGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 20586 0.66 0.513104
Target:  5'- gCGCCGugGUguuUCUGCaggcgcggcUCGGCCucGCg -3'
miRNA:   3'- gGCGGCugCAacuAGACG---------GGCCGG--UG- -5'
17126 5' -58.8 NC_004333.2 + 16939 0.66 0.502875
Target:  5'- gUGCCGAacagucgccCGUcGAUC-GCCuUGGCCGCg -3'
miRNA:   3'- gGCGGCU---------GCAaCUAGaCGG-GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 35527 0.66 0.502875
Target:  5'- gUGCCGACGUUGA-CgGUCaCGaCCGCa -3'
miRNA:   3'- gGCGGCUGCAACUaGaCGG-GCcGGUG- -5'
17126 5' -58.8 NC_004333.2 + 356 0.66 0.502875
Target:  5'- uCCGCaGACGUcgccgUGAcCgUGCUCGGCgGCg -3'
miRNA:   3'- -GGCGgCUGCA-----ACUaG-ACGGGCCGgUG- -5'
17126 5' -58.8 NC_004333.2 + 5676 0.66 0.502875
Target:  5'- gCUGCCGcACGgccugaacgUGcgCaUGCCCgauGGCCGCa -3'
miRNA:   3'- -GGCGGC-UGCa--------ACuaG-ACGGG---CCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 38735 0.66 0.492736
Target:  5'- gCUGCuCGACGaaguacGAcUUGCCCGuGCCGCc -3'
miRNA:   3'- -GGCG-GCUGCaa----CUaGACGGGC-CGGUG- -5'
17126 5' -58.8 NC_004333.2 + 20936 0.66 0.492736
Target:  5'- gCCGCCcauaccuuguGGCGUUcGAgcaggaUGCgCGGCCGCc -3'
miRNA:   3'- -GGCGG----------CUGCAA-CUag----ACGgGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 2434 0.66 0.482692
Target:  5'- aCGCCG-CGUcGAUCaacuuccagcUGCgcaaCGGCCGCa -3'
miRNA:   3'- gGCGGCuGCAaCUAG----------ACGg---GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 9982 0.67 0.472748
Target:  5'- aCCGCCGACGUacucUUUGCgcggguugUCGGCCGu -3'
miRNA:   3'- -GGCGGCUGCAacu-AGACG--------GGCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 29160 0.67 0.472748
Target:  5'- -aGCCGACGUaguagucgagUGA-CUgGUCgGGCCGCu -3'
miRNA:   3'- ggCGGCUGCA----------ACUaGA-CGGgCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 34974 0.67 0.472748
Target:  5'- uUCGUCGACGUUGA-CgGCCaaCGGCaACa -3'
miRNA:   3'- -GGCGGCUGCAACUaGaCGG--GCCGgUG- -5'
17126 5' -58.8 NC_004333.2 + 26803 0.67 0.472748
Target:  5'- gCGCCGACGcaaugGGUCaaguuCCUGGCCGg -3'
miRNA:   3'- gGCGGCUGCaa---CUAGac---GGGCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 22122 0.67 0.472748
Target:  5'- gCGCCGugcacGAUCUGUCCGcCCGCg -3'
miRNA:   3'- gGCGGCugcaaCUAGACGGGCcGGUG- -5'
17126 5' -58.8 NC_004333.2 + 13523 0.67 0.453178
Target:  5'- gCCGuCCGACGUgcucgcgGcgUUGCCgccggCGGCCAg -3'
miRNA:   3'- -GGC-GGCUGCAa------CuaGACGG-----GCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 26788 0.67 0.444516
Target:  5'- uCUGCCGACGaguagGcgCgcuucguugccgacgGCCCGGCCuGCa -3'
miRNA:   3'- -GGCGGCUGCaa---CuaGa--------------CGGGCCGG-UG- -5'
17126 5' -58.8 NC_004333.2 + 36227 0.67 0.424673
Target:  5'- gCGCUcuacgucaacgaGGCGUUGAaggUUGCgCCGGUCGCg -3'
miRNA:   3'- gGCGG------------CUGCAACUa--GACG-GGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 48181 0.67 0.424673
Target:  5'- aUGCCGGCGcggUGcgCgcGCCCGGUUGCc -3'
miRNA:   3'- gGCGGCUGCa--ACuaGa-CGGGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.