Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17126 | 5' | -58.8 | NC_004333.2 | + | 13917 | 0.65 | 0.532766 |
Target: 5'- gCUGCCGugGc-GAUCgugGCCgcugccgccagcgUGGCCGCc -3' miRNA: 3'- -GGCGGCugCaaCUAGa--CGG-------------GCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 20586 | 0.66 | 0.513104 |
Target: 5'- gCGCCGugGUguuUCUGCaggcgcggcUCGGCCucGCg -3' miRNA: 3'- gGCGGCugCAacuAGACG---------GGCCGG--UG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 7718 | 0.66 | 0.520314 |
Target: 5'- gCGCgGAcagcgacggauCGUUGAUCagGCcguaguucucgaggCCGGCCACg -3' miRNA: 3'- gGCGgCU-----------GCAACUAGa-CG--------------GGCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 10942 | 0.66 | 0.523416 |
Target: 5'- gCGCCGGCGU---UCUuCCCGcGCgGCg -3' miRNA: 3'- gGCGGCUGCAacuAGAcGGGC-CGgUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 2434 | 0.66 | 0.482692 |
Target: 5'- aCGCCG-CGUcGAUCaacuuccagcUGCgcaaCGGCCGCa -3' miRNA: 3'- gGCGGCuGCAaCUAG----------ACGg---GCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 38735 | 0.66 | 0.492736 |
Target: 5'- gCUGCuCGACGaaguacGAcUUGCCCGuGCCGCc -3' miRNA: 3'- -GGCG-GCUGCaa----CUaGACGGGC-CGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 20936 | 0.66 | 0.492736 |
Target: 5'- gCCGCCcauaccuuguGGCGUUcGAgcaggaUGCgCGGCCGCc -3' miRNA: 3'- -GGCGG----------CUGCAA-CUag----ACGgGCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 16939 | 0.66 | 0.502875 |
Target: 5'- gUGCCGAacagucgccCGUcGAUC-GCCuUGGCCGCg -3' miRNA: 3'- gGCGGCU---------GCAaCUAGaCGG-GCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 35527 | 0.66 | 0.502875 |
Target: 5'- gUGCCGACGUUGA-CgGUCaCGaCCGCa -3' miRNA: 3'- gGCGGCUGCAACUaGaCGG-GCcGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 356 | 0.66 | 0.502875 |
Target: 5'- uCCGCaGACGUcgccgUGAcCgUGCUCGGCgGCg -3' miRNA: 3'- -GGCGgCUGCA-----ACUaG-ACGGGCCGgUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 5676 | 0.66 | 0.502875 |
Target: 5'- gCUGCCGcACGgccugaacgUGcgCaUGCCCgauGGCCGCa -3' miRNA: 3'- -GGCGGC-UGCa--------ACuaG-ACGGG---CCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 26803 | 0.67 | 0.472748 |
Target: 5'- gCGCCGACGcaaugGGUCaaguuCCUGGCCGg -3' miRNA: 3'- gGCGGCUGCaa---CUAGac---GGGCCGGUg -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 26788 | 0.67 | 0.444516 |
Target: 5'- uCUGCCGACGaguagGcgCgcuucguugccgacgGCCCGGCCuGCa -3' miRNA: 3'- -GGCGGCUGCaa---CuaGa--------------CGGGCCGG-UG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 22122 | 0.67 | 0.472748 |
Target: 5'- gCGCCGugcacGAUCUGUCCGcCCGCg -3' miRNA: 3'- gGCGGCugcaaCUAGACGGGCcGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 29160 | 0.67 | 0.472748 |
Target: 5'- -aGCCGACGUaguagucgagUGA-CUgGUCgGGCCGCu -3' miRNA: 3'- ggCGGCUGCA----------ACUaGA-CGGgCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 9982 | 0.67 | 0.472748 |
Target: 5'- aCCGCCGACGUacucUUUGCgcggguugUCGGCCGu -3' miRNA: 3'- -GGCGGCUGCAacu-AGACG--------GGCCGGUg -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 13523 | 0.67 | 0.453178 |
Target: 5'- gCCGuCCGACGUgcucgcgGcgUUGCCgccggCGGCCAg -3' miRNA: 3'- -GGC-GGCUGCAa------CuaGACGG-----GCCGGUg -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 36227 | 0.67 | 0.424673 |
Target: 5'- gCGCUcuacgucaacgaGGCGUUGAaggUUGCgCCGGUCGCg -3' miRNA: 3'- gGCGG------------CUGCAACUa--GACG-GGCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 48181 | 0.67 | 0.424673 |
Target: 5'- aUGCCGGCGcggUGcgCgcGCCCGGUUGCc -3' miRNA: 3'- gGCGGCUGCa--ACuaGa-CGGGCCGGUG- -5' |
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17126 | 5' | -58.8 | NC_004333.2 | + | 34974 | 0.67 | 0.472748 |
Target: 5'- uUCGUCGACGUUGA-CgGCCaaCGGCaACa -3' miRNA: 3'- -GGCGGCUGCAACUaGaCGG--GCCGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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