miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17126 5' -58.8 NC_004333.2 + 8433 1.1 0.000374
Target:  5'- gCCGCCGACGUUGAUCUGCCCGGCCACc -3'
miRNA:   3'- -GGCGGCUGCAACUAGACGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 31596 0.77 0.098757
Target:  5'- uUGCCGACGUUGAUaagcGCCgucuCGGCCGCu -3'
miRNA:   3'- gGCGGCUGCAACUAga--CGG----GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 2777 0.75 0.137408
Target:  5'- uUCGCCGACGa-GAUCgGCCuguCGGCCGCc -3'
miRNA:   3'- -GGCGGCUGCaaCUAGaCGG---GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 31204 0.75 0.149049
Target:  5'- aCGCCGACauuugccgGUUGGUCaUGCCggucgcgaCGGCCGCg -3'
miRNA:   3'- gGCGGCUG--------CAACUAG-ACGG--------GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 2003 0.74 0.153125
Target:  5'- aCGCCGGCGcgGAUgaUGCCCgacgucacGGCCGCa -3'
miRNA:   3'- gGCGGCUGCaaCUAg-ACGGG--------CCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 41796 0.72 0.221613
Target:  5'- gCGCCGAucuccuCGUUGAUC-GCgCCGuGCCGCc -3'
miRNA:   3'- gGCGGCU------GCAACUAGaCG-GGC-CGGUG- -5'
17126 5' -58.8 NC_004333.2 + 45059 0.72 0.227392
Target:  5'- gCGCCGugGUagaucguaUGGUgCUGCaguCGGCCGCc -3'
miRNA:   3'- gGCGGCugCA--------ACUA-GACGg--GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 41580 0.71 0.245498
Target:  5'- gCGCCauuCGUUGA-CUGCCUGGUUGCa -3'
miRNA:   3'- gGCGGcu-GCAACUaGACGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 41816 0.71 0.251794
Target:  5'- gCUGcCCGACGgcacGA-CggcGCCCGGCCGCg -3'
miRNA:   3'- -GGC-GGCUGCaa--CUaGa--CGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 5121 0.71 0.264784
Target:  5'- gCGCCGACGUcGGccaacagccggCcGCCUGGCCGCc -3'
miRNA:   3'- gGCGGCUGCAaCUa----------GaCGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 5391 0.7 0.283176
Target:  5'- -aGCCGGCGUUGAccuguucgcguucuUCUGCCaucgCGGCaGCg -3'
miRNA:   3'- ggCGGCUGCAACU--------------AGACGG----GCCGgUG- -5'
17126 5' -58.8 NC_004333.2 + 7085 0.7 0.285281
Target:  5'- uUCGCCGuuUGaUGaAUCUGCaCCGGCCAa -3'
miRNA:   3'- -GGCGGCu-GCaAC-UAGACG-GGCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 16891 0.7 0.285281
Target:  5'- aCgGCCGACugccUGAUCuggUGCCCGGgCGCc -3'
miRNA:   3'- -GgCGGCUGca--ACUAG---ACGGGCCgGUG- -5'
17126 5' -58.8 NC_004333.2 + 25370 0.7 0.307009
Target:  5'- gUCGCCGGCGUcg----GCCCGGUUGCg -3'
miRNA:   3'- -GGCGGCUGCAacuagaCGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 9060 0.7 0.314528
Target:  5'- aCGCCG-CGUcGGUCgccGCCgcgcaCGGCCGCa -3'
miRNA:   3'- gGCGGCuGCAaCUAGa--CGG-----GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 38392 0.7 0.314528
Target:  5'- gCGCCGGCG-UGA-Cg--CCGGCCACg -3'
miRNA:   3'- gGCGGCUGCaACUaGacgGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 26646 0.7 0.314528
Target:  5'- aCCGCCGcuCGUgagcgUGAUC-GCgCCGGCUGCc -3'
miRNA:   3'- -GGCGGCu-GCA-----ACUAGaCG-GGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 4433 0.7 0.314528
Target:  5'- cCCaGUCcGCGUUGuuGUCUG-CCGGCCACu -3'
miRNA:   3'- -GG-CGGcUGCAAC--UAGACgGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 23493 0.7 0.314528
Target:  5'- uCCgGCCGGCGgcgGGUacgUGCCgGGCUACc -3'
miRNA:   3'- -GG-CGGCUGCaa-CUAg--ACGGgCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 13084 0.7 0.314528
Target:  5'- gCGCaGGCGUUGA--UGCCCGGCgCGa -3'
miRNA:   3'- gGCGgCUGCAACUagACGGGCCG-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.