miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17126 5' -58.8 NC_004333.2 + 27226 0.68 0.415412
Target:  5'- aUCGCCGuCGUgaucgcagcGUCUGCCUGcGCCGa -3'
miRNA:   3'- -GGCGGCuGCAac-------UAGACGGGC-CGGUg -5'
17126 5' -58.8 NC_004333.2 + 38624 0.68 0.415412
Target:  5'- gCUGcCCGugGUgcccguucUGAUCgGCCCgGGCgGCa -3'
miRNA:   3'- -GGC-GGCugCA--------ACUAGaCGGG-CCGgUG- -5'
17126 5' -58.8 NC_004333.2 + 20624 0.68 0.406275
Target:  5'- gCGCCGAC---GAUCagcgGCgCGGCCAUg -3'
miRNA:   3'- gGCGGCUGcaaCUAGa---CGgGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 13624 0.68 0.406275
Target:  5'- -aGCCGACac--AUCcgGCCUGGCCGCc -3'
miRNA:   3'- ggCGGCUGcaacUAGa-CGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 14476 0.68 0.406275
Target:  5'- aCGCCGACGaacacgaaGUCggacGCCUGGCCGu -3'
miRNA:   3'- gGCGGCUGCaac-----UAGa---CGGGCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 20498 0.68 0.403559
Target:  5'- gCCGCCGaACGUguuuucgaaggcggUGAcgagCgGCgCGGCCACu -3'
miRNA:   3'- -GGCGGC-UGCA--------------ACUa---GaCGgGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 14027 0.68 0.397266
Target:  5'- gCCGCCGGCc-UGAagUC-GCCaaggCGGCCACg -3'
miRNA:   3'- -GGCGGCUGcaACU--AGaCGG----GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 18507 0.68 0.397266
Target:  5'- aCGCCGACGgacg-CUGCagCGGCCu- -3'
miRNA:   3'- gGCGGCUGCaacuaGACGg-GCCGGug -5'
17126 5' -58.8 NC_004333.2 + 2729 0.68 0.388386
Target:  5'- gCUGCCGGCGUUGcggCUGauacgCCGGCaagCGCg -3'
miRNA:   3'- -GGCGGCUGCAACua-GACg----GGCCG---GUG- -5'
17126 5' -58.8 NC_004333.2 + 37462 0.69 0.354196
Target:  5'- gCGCCGACGUaggacGAUgaGgaCGGCCGCg -3'
miRNA:   3'- gGCGGCUGCAa----CUAgaCggGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 2399 0.69 0.345986
Target:  5'- gCGCCGGCG---GUC-GCCUGGUCGCc -3'
miRNA:   3'- gGCGGCUGCaacUAGaCGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 43230 0.69 0.337915
Target:  5'- gUGCCGuGCGUUcgcaUGCCCGcGCCGCa -3'
miRNA:   3'- gGCGGC-UGCAAcuagACGGGC-CGGUG- -5'
17126 5' -58.8 NC_004333.2 + 9633 0.69 0.329981
Target:  5'- gCUGCCGGCGgcGcgCcugcGCCCGGCUg- -3'
miRNA:   3'- -GGCGGCUGCaaCuaGa---CGGGCCGGug -5'
17126 5' -58.8 NC_004333.2 + 9060 0.7 0.314528
Target:  5'- aCGCCG-CGUcGGUCgccGCCgcgcaCGGCCGCa -3'
miRNA:   3'- gGCGGCuGCAaCUAGa--CGG-----GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 13084 0.7 0.314528
Target:  5'- gCGCaGGCGUUGA--UGCCCGGCgCGa -3'
miRNA:   3'- gGCGgCUGCAACUagACGGGCCG-GUg -5'
17126 5' -58.8 NC_004333.2 + 4433 0.7 0.314528
Target:  5'- cCCaGUCcGCGUUGuuGUCUG-CCGGCCACu -3'
miRNA:   3'- -GG-CGGcUGCAAC--UAGACgGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 26646 0.7 0.314528
Target:  5'- aCCGCCGcuCGUgagcgUGAUC-GCgCCGGCUGCc -3'
miRNA:   3'- -GGCGGCu-GCA-----ACUAGaCG-GGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 38392 0.7 0.314528
Target:  5'- gCGCCGGCG-UGA-Cg--CCGGCCACg -3'
miRNA:   3'- gGCGGCUGCaACUaGacgGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 23493 0.7 0.314528
Target:  5'- uCCgGCCGGCGgcgGGUacgUGCCgGGCUACc -3'
miRNA:   3'- -GG-CGGCUGCaa-CUAg--ACGGgCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 25370 0.7 0.307009
Target:  5'- gUCGCCGGCGUcg----GCCCGGUUGCg -3'
miRNA:   3'- -GGCGGCUGCAacuagaCGGGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.