miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17126 5' -58.8 NC_004333.2 + 356 0.66 0.502875
Target:  5'- uCCGCaGACGUcgccgUGAcCgUGCUCGGCgGCg -3'
miRNA:   3'- -GGCGgCUGCA-----ACUaG-ACGGGCCGgUG- -5'
17126 5' -58.8 NC_004333.2 + 2003 0.74 0.153125
Target:  5'- aCGCCGGCGcgGAUgaUGCCCgacgucacGGCCGCa -3'
miRNA:   3'- gGCGGCUGCaaCUAg-ACGGG--------CCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 2399 0.69 0.345986
Target:  5'- gCGCCGGCG---GUC-GCCUGGUCGCc -3'
miRNA:   3'- gGCGGCUGCaacUAGaCGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 2434 0.66 0.482692
Target:  5'- aCGCCG-CGUcGAUCaacuuccagcUGCgcaaCGGCCGCa -3'
miRNA:   3'- gGCGGCuGCAaCUAG----------ACGg---GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 2729 0.68 0.388386
Target:  5'- gCUGCCGGCGUUGcggCUGauacgCCGGCaagCGCg -3'
miRNA:   3'- -GGCGGCUGCAACua-GACg----GGCCG---GUG- -5'
17126 5' -58.8 NC_004333.2 + 2777 0.75 0.137408
Target:  5'- uUCGCCGACGa-GAUCgGCCuguCGGCCGCc -3'
miRNA:   3'- -GGCGGCUGCaaCUAGaCGG---GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 4433 0.7 0.314528
Target:  5'- cCCaGUCcGCGUUGuuGUCUG-CCGGCCACu -3'
miRNA:   3'- -GG-CGGcUGCAAC--UAGACgGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 5121 0.71 0.264784
Target:  5'- gCGCCGACGUcGGccaacagccggCcGCCUGGCCGCc -3'
miRNA:   3'- gGCGGCUGCAaCUa----------GaCGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 5391 0.7 0.283176
Target:  5'- -aGCCGGCGUUGAccuguucgcguucuUCUGCCaucgCGGCaGCg -3'
miRNA:   3'- ggCGGCUGCAACU--------------AGACGG----GCCGgUG- -5'
17126 5' -58.8 NC_004333.2 + 5676 0.66 0.502875
Target:  5'- gCUGCCGcACGgccugaacgUGcgCaUGCCCgauGGCCGCa -3'
miRNA:   3'- -GGCGGC-UGCa--------ACuaG-ACGGG---CCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 7085 0.7 0.285281
Target:  5'- uUCGCCGuuUGaUGaAUCUGCaCCGGCCAa -3'
miRNA:   3'- -GGCGGCu-GCaAC-UAGACG-GGCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 7718 0.66 0.520314
Target:  5'- gCGCgGAcagcgacggauCGUUGAUCagGCcguaguucucgaggCCGGCCACg -3'
miRNA:   3'- gGCGgCU-----------GCAACUAGa-CG--------------GGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 8433 1.1 0.000374
Target:  5'- gCCGCCGACGUUGAUCUGCCCGGCCACc -3'
miRNA:   3'- -GGCGGCUGCAACUAGACGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 9060 0.7 0.314528
Target:  5'- aCGCCG-CGUcGGUCgccGCCgcgcaCGGCCGCa -3'
miRNA:   3'- gGCGGCuGCAaCUAGa--CGG-----GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 9633 0.69 0.329981
Target:  5'- gCUGCCGGCGgcGcgCcugcGCCCGGCUg- -3'
miRNA:   3'- -GGCGGCUGCaaCuaGa---CGGGCCGGug -5'
17126 5' -58.8 NC_004333.2 + 9982 0.67 0.472748
Target:  5'- aCCGCCGACGUacucUUUGCgcggguugUCGGCCGu -3'
miRNA:   3'- -GGCGGCUGCAacu-AGACG--------GGCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 10942 0.66 0.523416
Target:  5'- gCGCCGGCGU---UCUuCCCGcGCgGCg -3'
miRNA:   3'- gGCGGCUGCAacuAGAcGGGC-CGgUG- -5'
17126 5' -58.8 NC_004333.2 + 13084 0.7 0.314528
Target:  5'- gCGCaGGCGUUGA--UGCCCGGCgCGa -3'
miRNA:   3'- gGCGgCUGCAACUagACGGGCCG-GUg -5'
17126 5' -58.8 NC_004333.2 + 13523 0.67 0.453178
Target:  5'- gCCGuCCGACGUgcucgcgGcgUUGCCgccggCGGCCAg -3'
miRNA:   3'- -GGC-GGCUGCAa------CuaGACGG-----GCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 13624 0.68 0.406275
Target:  5'- -aGCCGACac--AUCcgGCCUGGCCGCc -3'
miRNA:   3'- ggCGGCUGcaacUAGa-CGGGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.