miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17126 5' -58.8 NC_004333.2 + 8433 1.1 0.000374
Target:  5'- gCCGCCGACGUUGAUCUGCCCGGCCACc -3'
miRNA:   3'- -GGCGGCUGCAACUAGACGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 27226 0.68 0.415412
Target:  5'- aUCGCCGuCGUgaucgcagcGUCUGCCUGcGCCGa -3'
miRNA:   3'- -GGCGGCuGCAac-------UAGACGGGC-CGGUg -5'
17126 5' -58.8 NC_004333.2 + 13523 0.67 0.453178
Target:  5'- gCCGuCCGACGUgcucgcgGcgUUGCCgccggCGGCCAg -3'
miRNA:   3'- -GGC-GGCUGCAa------CuaGACGG-----GCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 13917 0.65 0.532766
Target:  5'- gCUGCCGugGc-GAUCgugGCCgcugccgccagcgUGGCCGCc -3'
miRNA:   3'- -GGCGGCugCaaCUAGa--CGG-------------GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 41580 0.71 0.245498
Target:  5'- gCGCCauuCGUUGA-CUGCCUGGUUGCa -3'
miRNA:   3'- gGCGGcu-GCAACUaGACGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 41816 0.71 0.251794
Target:  5'- gCUGcCCGACGgcacGA-CggcGCCCGGCCGCg -3'
miRNA:   3'- -GGC-GGCUGCaa--CUaGa--CGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 16891 0.7 0.285281
Target:  5'- aCgGCCGACugccUGAUCuggUGCCCGGgCGCc -3'
miRNA:   3'- -GgCGGCUGca--ACUAG---ACGGGCCgGUG- -5'
17126 5' -58.8 NC_004333.2 + 4433 0.7 0.314528
Target:  5'- cCCaGUCcGCGUUGuuGUCUG-CCGGCCACu -3'
miRNA:   3'- -GG-CGGcUGCAAC--UAGACgGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 9633 0.69 0.329981
Target:  5'- gCUGCCGGCGgcGcgCcugcGCCCGGCUg- -3'
miRNA:   3'- -GGCGGCUGCaaCuaGa---CGGGCCGGug -5'
17126 5' -58.8 NC_004333.2 + 38624 0.68 0.415412
Target:  5'- gCUGcCCGugGUgcccguucUGAUCgGCCCgGGCgGCa -3'
miRNA:   3'- -GGC-GGCugCA--------ACUAGaCGGG-CCGgUG- -5'
17126 5' -58.8 NC_004333.2 + 2399 0.69 0.345986
Target:  5'- gCGCCGGCG---GUC-GCCUGGUCGCc -3'
miRNA:   3'- gGCGGCUGCaacUAGaCGGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 38392 0.7 0.314528
Target:  5'- gCGCCGGCG-UGA-Cg--CCGGCCACg -3'
miRNA:   3'- gGCGGCUGCaACUaGacgGGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 31596 0.77 0.098757
Target:  5'- uUGCCGACGUUGAUaagcGCCgucuCGGCCGCu -3'
miRNA:   3'- gGCGGCUGCAACUAga--CGG----GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 18507 0.68 0.397266
Target:  5'- aCGCCGACGgacg-CUGCagCGGCCu- -3'
miRNA:   3'- gGCGGCUGCaacuaGACGg-GCCGGug -5'
17126 5' -58.8 NC_004333.2 + 31204 0.75 0.149049
Target:  5'- aCGCCGACauuugccgGUUGGUCaUGCCggucgcgaCGGCCGCg -3'
miRNA:   3'- gGCGGCUG--------CAACUAG-ACGG--------GCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 26646 0.7 0.314528
Target:  5'- aCCGCCGcuCGUgagcgUGAUC-GCgCCGGCUGCc -3'
miRNA:   3'- -GGCGGCu-GCA-----ACUAGaCG-GGCCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 14476 0.68 0.406275
Target:  5'- aCGCCGACGaacacgaaGUCggacGCCUGGCCGu -3'
miRNA:   3'- gGCGGCUGCaac-----UAGa---CGGGCCGGUg -5'
17126 5' -58.8 NC_004333.2 + 26788 0.67 0.444516
Target:  5'- uCUGCCGACGaguagGcgCgcuucguugccgacgGCCCGGCCuGCa -3'
miRNA:   3'- -GGCGGCUGCaa---CuaGa--------------CGGGCCGG-UG- -5'
17126 5' -58.8 NC_004333.2 + 2003 0.74 0.153125
Target:  5'- aCGCCGGCGcgGAUgaUGCCCgacgucacGGCCGCa -3'
miRNA:   3'- gGCGGCUGCaaCUAg-ACGGG--------CCGGUG- -5'
17126 5' -58.8 NC_004333.2 + 5391 0.7 0.283176
Target:  5'- -aGCCGGCGUUGAccuguucgcguucuUCUGCCaucgCGGCaGCg -3'
miRNA:   3'- ggCGGCUGCAACU--------------AGACGG----GCCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.