miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17127 3' -55.2 NC_004333.2 + 29971 0.65 0.728193
Target:  5'- aGCGCGgccgcgcugccacCGGCGCCGA---GCGcGAGCa -3'
miRNA:   3'- -UGUGCa------------GCUGCGGCUagaCGCaCUCG- -5'
17127 3' -55.2 NC_004333.2 + 43379 0.66 0.721808
Target:  5'- -gGCGUCGGC-UCGAUCgGCacGAGCg -3'
miRNA:   3'- ugUGCAGCUGcGGCUAGaCGcaCUCG- -5'
17127 3' -55.2 NC_004333.2 + 45793 0.66 0.721808
Target:  5'- gGCACGUUcGCGCCGggCUcgagaugcagGCGUGcGUu -3'
miRNA:   3'- -UGUGCAGcUGCGGCuaGA----------CGCACuCG- -5'
17127 3' -55.2 NC_004333.2 + 29218 0.66 0.721808
Target:  5'- cUACGUCGgcuACGCCGA--UGCGauGGCg -3'
miRNA:   3'- uGUGCAGC---UGCGGCUagACGCacUCG- -5'
17127 3' -55.2 NC_004333.2 + 33087 0.66 0.721808
Target:  5'- -aGCGaUCGACGCCGAUCc-CGauAGCg -3'
miRNA:   3'- ugUGC-AGCUGCGGCUAGacGCacUCG- -5'
17127 3' -55.2 NC_004333.2 + 3690 0.66 0.721808
Target:  5'- aGC-CGUCG-CGUCGuagCUGCGgaucgucugguUGAGCg -3'
miRNA:   3'- -UGuGCAGCuGCGGCua-GACGC-----------ACUCG- -5'
17127 3' -55.2 NC_004333.2 + 26621 0.66 0.720741
Target:  5'- aGCugG-CGGCGuuGAUCguUGUcgcaccgccgcucGUGAGCg -3'
miRNA:   3'- -UGugCaGCUGCggCUAG--ACG-------------CACUCG- -5'
17127 3' -55.2 NC_004333.2 + 11691 0.66 0.711096
Target:  5'- aACAuaucCGUCGacgcaGCGCCGggCgGCGUGcuGGCg -3'
miRNA:   3'- -UGU----GCAGC-----UGCGGCuaGaCGCAC--UCG- -5'
17127 3' -55.2 NC_004333.2 + 37360 0.66 0.711096
Target:  5'- aACGCGucgccuucgacaUCGACGUCGAUCgGaaaGAGCg -3'
miRNA:   3'- -UGUGC------------AGCUGCGGCUAGaCgcaCUCG- -5'
17127 3' -55.2 NC_004333.2 + 46200 0.66 0.700306
Target:  5'- gGCGCGUCucGCGCCGgAUCaGCGccaGGCg -3'
miRNA:   3'- -UGUGCAGc-UGCGGC-UAGaCGCac-UCG- -5'
17127 3' -55.2 NC_004333.2 + 32286 0.66 0.700306
Target:  5'- cGCGgGUCGGCGgCGAugUCgacgUGCGUcAGCa -3'
miRNA:   3'- -UGUgCAGCUGCgGCU--AG----ACGCAcUCG- -5'
17127 3' -55.2 NC_004333.2 + 8942 0.66 0.68945
Target:  5'- uCGCGcCGGCGCUGuccAUC-GCGUGcGCg -3'
miRNA:   3'- uGUGCaGCUGCGGC---UAGaCGCACuCG- -5'
17127 3' -55.2 NC_004333.2 + 17568 0.66 0.678539
Target:  5'- aGCAgGUCGGUG-CGGUCgagugcgagcaGCGUGAGCg -3'
miRNA:   3'- -UGUgCAGCUGCgGCUAGa----------CGCACUCG- -5'
17127 3' -55.2 NC_004333.2 + 32075 0.66 0.678539
Target:  5'- gACGCGaCGAuCGCauaGAUCgGCGUcGGCg -3'
miRNA:   3'- -UGUGCaGCU-GCGg--CUAGaCGCAcUCG- -5'
17127 3' -55.2 NC_004333.2 + 235 0.67 0.667583
Target:  5'- uCGCGccaGGCGCCGAUC-GUGUGcucGCg -3'
miRNA:   3'- uGUGCag-CUGCGGCUAGaCGCACu--CG- -5'
17127 3' -55.2 NC_004333.2 + 2993 0.67 0.667583
Target:  5'- gGCACGUUGACGgucaCGAccgCUGCGc-AGCa -3'
miRNA:   3'- -UGUGCAGCUGCg---GCUa--GACGCacUCG- -5'
17127 3' -55.2 NC_004333.2 + 11974 0.67 0.666485
Target:  5'- cGCGCGUCGACgaucgcgGCCGuAUC-GCG-GuGCa -3'
miRNA:   3'- -UGUGCAGCUG-------CGGC-UAGaCGCaCuCG- -5'
17127 3' -55.2 NC_004333.2 + 27160 0.67 0.656594
Target:  5'- --gUGUCGGCGCgCGAUCagccaUGCGUGcccccgagguguGGCg -3'
miRNA:   3'- uguGCAGCUGCG-GCUAG-----ACGCAC------------UCG- -5'
17127 3' -55.2 NC_004333.2 + 28974 0.67 0.656594
Target:  5'- gGCAaGUauGCGCCGGcCUGCGccGAGCg -3'
miRNA:   3'- -UGUgCAgcUGCGGCUaGACGCa-CUCG- -5'
17127 3' -55.2 NC_004333.2 + 21758 0.67 0.654393
Target:  5'- aGCGCGUCGAgcugcucggccgucaUaucuucgagcaaaugGCCGAUCUGCGcGcGCa -3'
miRNA:   3'- -UGUGCAGCU---------------G---------------CGGCUAGACGCaCuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.