miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 13884 0.66 0.696818
Target:  5'- uCGCCGuCgcUGCGUCUcgCGCGUCa -3'
miRNA:   3'- cGUGGCuGaaGCGUAGGuaGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 27824 0.66 0.696818
Target:  5'- uGCGCCuGACgggcUCgGCGgccgaCCAgauUCGCGCCGc -3'
miRNA:   3'- -CGUGG-CUGa---AG-CGUa----GGU---AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41398 0.66 0.696818
Target:  5'- aCACUcGCgcgUCaCGUCCAUCGCgcGCCGg -3'
miRNA:   3'- cGUGGcUGa--AGcGUAGGUAGCG--CGGC- -5'
17128 5' -55.7 NC_004333.2 + 15206 0.66 0.693571
Target:  5'- -aACCGACgccaagUCGaucaugaaggaaccCGUCUAUCGgGCCGu -3'
miRNA:   3'- cgUGGCUGa-----AGC--------------GUAGGUAGCgCGGC- -5'
17128 5' -55.7 NC_004333.2 + 26721 0.66 0.685974
Target:  5'- cGCGCCGGCcaggaacUUGac-CCAUUGCGUCGg -3'
miRNA:   3'- -CGUGGCUGa------AGCguaGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 30293 0.66 0.685974
Target:  5'- aCGgCGAgcUgGCcgCCGUCGCGCCu -3'
miRNA:   3'- cGUgGCUgaAgCGuaGGUAGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 44912 0.66 0.685974
Target:  5'- aGCugCGuCUcgaUGCGUCgCG-CGCGCCGa -3'
miRNA:   3'- -CGugGCuGAa--GCGUAG-GUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 43438 0.66 0.685974
Target:  5'- cGgGCUGACggacgcgCGCAUCgCGcgcuugCGCGCCGc -3'
miRNA:   3'- -CgUGGCUGaa-----GCGUAG-GUa-----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 15794 0.66 0.685974
Target:  5'- -gAUCGAUcUCgaaGCGUUCgAUCGCGCCGa -3'
miRNA:   3'- cgUGGCUGaAG---CGUAGG-UAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 32533 0.66 0.685974
Target:  5'- -uGCCGACgUCGCGcggCgCGcUCGCGUCGa -3'
miRNA:   3'- cgUGGCUGaAGCGUa--G-GU-AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 2398 0.66 0.685974
Target:  5'- gGCGCCGGCggUCGCcuggucgCCGUacagcggcagCGUGCCu -3'
miRNA:   3'- -CGUGGCUGa-AGCGua-----GGUA----------GCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 26495 0.66 0.685974
Target:  5'- cGUGCCGcACgccauuuccgUCGaugaaGUCCggCGCGCCGa -3'
miRNA:   3'- -CGUGGC-UGa---------AGCg----UAGGuaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 18258 0.66 0.685974
Target:  5'- cGCGCaCGACgagCGCAUCacccggCaCGCCGg -3'
miRNA:   3'- -CGUG-GCUGaa-GCGUAGgua---GcGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 8728 0.66 0.685974
Target:  5'- gGCACCGucACga-GCAagCCGggcgcCGCGCCGa -3'
miRNA:   3'- -CGUGGC--UGaagCGUa-GGUa----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 13179 0.66 0.684887
Target:  5'- uCGCCGACUgggcgcgauacgaUCGUGUgCAggCGCGUCGc -3'
miRNA:   3'- cGUGGCUGA-------------AGCGUAgGUa-GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 37782 0.66 0.671801
Target:  5'- -uGCCGACaUCgagcaggccauugaGCcgCCA-CGCGCCGg -3'
miRNA:   3'- cgUGGCUGaAG--------------CGuaGGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 9690 0.66 0.664141
Target:  5'- cCGCCGGCagccggugCGCAaCCGgccgaugcCGCGCCGg -3'
miRNA:   3'- cGUGGCUGaa------GCGUaGGUa-------GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 14944 0.66 0.664141
Target:  5'- aGCGCCu-CUUCaGCAuucUUCGUCGCGCg- -3'
miRNA:   3'- -CGUGGcuGAAG-CGU---AGGUAGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 18507 0.66 0.664141
Target:  5'- aCGCCGACggacgcUGCAgcggCCuUCGCaGCCGg -3'
miRNA:   3'- cGUGGCUGaa----GCGUa---GGuAGCG-CGGC- -5'
17128 5' -55.7 NC_004333.2 + 15408 0.66 0.664141
Target:  5'- uGCGCCGAgaUCGacaaGUUCAUCGaCGaCCu -3'
miRNA:   3'- -CGUGGCUgaAGCg---UAGGUAGC-GC-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.