miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 13884 0.66 0.696818
Target:  5'- uCGCCGuCgcUGCGUCUcgCGCGUCa -3'
miRNA:   3'- cGUGGCuGaaGCGUAGGuaGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 12139 0.66 0.646585
Target:  5'- uCGCCGuCguggUCGUAgCCAguuuccucucgugucUCGCGCCGa -3'
miRNA:   3'- cGUGGCuGa---AGCGUaGGU---------------AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 13179 0.66 0.684887
Target:  5'- uCGCCGACUgggcgcgauacgaUCGUGUgCAggCGCGUCGc -3'
miRNA:   3'- cGUGGCUGA-------------AGCGUAgGUa-GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 44912 0.66 0.685974
Target:  5'- aGCugCGuCUcgaUGCGUCgCG-CGCGCCGa -3'
miRNA:   3'- -CGugGCuGAa--GCGUAG-GUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 47472 0.66 0.650979
Target:  5'- cGCGCCGGCggcgacugccgCGCugaaCGagGCGCCGg -3'
miRNA:   3'- -CGUGGCUGaa---------GCGuag-GUagCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 23866 0.66 0.653175
Target:  5'- -aACCGACgaCGaCGUUCGgguUCGUGCCGc -3'
miRNA:   3'- cgUGGCUGaaGC-GUAGGU---AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 28408 0.66 0.653175
Target:  5'- cCGCCGcaaUCGCAaCgUGUCGCGCCGg -3'
miRNA:   3'- cGUGGCugaAGCGUaG-GUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11584 0.66 0.664141
Target:  5'- uGCGCUGAUUgUCGacguacaaAUCCugaaaCGCGCCGg -3'
miRNA:   3'- -CGUGGCUGA-AGCg-------UAGGua---GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 14944 0.66 0.664141
Target:  5'- aGCGCCu-CUUCaGCAuucUUCGUCGCGCg- -3'
miRNA:   3'- -CGUGGcuGAAG-CGU---AGGUAGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 37260 0.66 0.64109
Target:  5'- gGCACCGGCg-CGCGUCgugagcggcguguCGcCGCGCUGc -3'
miRNA:   3'- -CGUGGCUGaaGCGUAG-------------GUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 20531 0.66 0.648782
Target:  5'- -aACCGGCUgcgucacgaccggCGCAggCuUCGCGCCGc -3'
miRNA:   3'- cgUGGCUGAa------------GCGUagGuAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 20016 0.66 0.653175
Target:  5'- aGCACuCGACggcggcUCGCcgCCcggCGCGCuCGu -3'
miRNA:   3'- -CGUG-GCUGa-----AGCGuaGGua-GCGCG-GC- -5'
17128 5' -55.7 NC_004333.2 + 27824 0.66 0.696818
Target:  5'- uGCGCCuGACgggcUCgGCGgccgaCCAgauUCGCGCCGc -3'
miRNA:   3'- -CGUGG-CUGa---AG-CGUa----GGU---AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41398 0.66 0.696818
Target:  5'- aCACUcGCgcgUCaCGUCCAUCGCgcGCCGg -3'
miRNA:   3'- cGUGGcUGa--AGcGUAGGUAGCG--CGGC- -5'
17128 5' -55.7 NC_004333.2 + 15206 0.66 0.693571
Target:  5'- -aACCGACgccaagUCGaucaugaaggaaccCGUCUAUCGgGCCGu -3'
miRNA:   3'- cgUGGCUGa-----AGC--------------GUAGGUAGCgCGGC- -5'
17128 5' -55.7 NC_004333.2 + 18258 0.66 0.685974
Target:  5'- cGCGCaCGACgagCGCAUCacccggCaCGCCGg -3'
miRNA:   3'- -CGUG-GCUGaa-GCGUAGgua---GcGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 8728 0.66 0.685974
Target:  5'- gGCACCGucACga-GCAagCCGggcgcCGCGCCGa -3'
miRNA:   3'- -CGUGGC--UGaagCGUa-GGUa----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 37782 0.66 0.671801
Target:  5'- -uGCCGACaUCgagcaggccauugaGCcgCCA-CGCGCCGg -3'
miRNA:   3'- cgUGGCUGaAG--------------CGuaGGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 9690 0.66 0.664141
Target:  5'- cCGCCGGCagccggugCGCAaCCGgccgaugcCGCGCCGg -3'
miRNA:   3'- cGUGGCUGaa------GCGUaGGUa-------GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 15408 0.66 0.664141
Target:  5'- uGCGCCGAgaUCGacaaGUUCAUCGaCGaCCu -3'
miRNA:   3'- -CGUGGCUgaAGCg---UAGGUAGC-GC-GGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.