miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 8728 0.66 0.685974
Target:  5'- gGCACCGucACga-GCAagCCGggcgcCGCGCCGa -3'
miRNA:   3'- -CGUGGC--UGaagCGUa-GGUa----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 18258 0.66 0.685974
Target:  5'- cGCGCaCGACgagCGCAUCacccggCaCGCCGg -3'
miRNA:   3'- -CGUG-GCUGaa-GCGUAGgua---GcGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 15206 0.66 0.693571
Target:  5'- -aACCGACgccaagUCGaucaugaaggaaccCGUCUAUCGgGCCGu -3'
miRNA:   3'- cgUGGCUGa-----AGC--------------GUAGGUAGCgCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41398 0.66 0.696818
Target:  5'- aCACUcGCgcgUCaCGUCCAUCGCgcGCCGg -3'
miRNA:   3'- cGUGGcUGa--AGcGUAGGUAGCG--CGGC- -5'
17128 5' -55.7 NC_004333.2 + 27824 0.66 0.696818
Target:  5'- uGCGCCuGACgggcUCgGCGgccgaCCAgauUCGCGCCGc -3'
miRNA:   3'- -CGUGG-CUGa---AG-CGUa----GGU---AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 20016 0.66 0.653175
Target:  5'- aGCACuCGACggcggcUCGCcgCCcggCGCGCuCGu -3'
miRNA:   3'- -CGUG-GCUGa-----AGCGuaGGua-GCGCG-GC- -5'
17128 5' -55.7 NC_004333.2 + 37260 0.66 0.64109
Target:  5'- gGCACCGGCg-CGCGUCgugagcggcguguCGcCGCGCUGc -3'
miRNA:   3'- -CGUGGCUGaaGCGUAG-------------GUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 20531 0.66 0.648782
Target:  5'- -aACCGGCUgcgucacgaccggCGCAggCuUCGCGCCGc -3'
miRNA:   3'- cgUGGCUGAa------------GCGUagGuAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11756 0.67 0.632294
Target:  5'- gGCACCGACguucaccuugagugCGCGaCCAuacUUGCGCuCGa -3'
miRNA:   3'- -CGUGGCUGaa------------GCGUaGGU---AGCGCG-GC- -5'
17128 5' -55.7 NC_004333.2 + 39732 0.67 0.634493
Target:  5'- cGCGCCGcCUcggcgaccgugaaguUCGCGUCCggcagcaGUCG-GCCGc -3'
miRNA:   3'- -CGUGGCuGA---------------AGCGUAGG-------UAGCgCGGC- -5'
17128 5' -55.7 NC_004333.2 + 10736 0.67 0.635593
Target:  5'- uGCACCGGCcggCGCGaCCGugacgucaccuuucuUCGcCGCCa -3'
miRNA:   3'- -CGUGGCUGaa-GCGUaGGU---------------AGC-GCGGc -5'
17128 5' -55.7 NC_004333.2 + 3387 0.67 0.631194
Target:  5'- -gACCGGCgUCGCcgUCGUCGCGg-- -3'
miRNA:   3'- cgUGGCUGaAGCGuaGGUAGCGCggc -5'
17128 5' -55.7 NC_004333.2 + 1142 0.67 0.630095
Target:  5'- uGCGCgCGACgUUGCAcugcauaUCCgAUCGCGgCGg -3'
miRNA:   3'- -CGUG-GCUGaAGCGU-------AGG-UAGCGCgGC- -5'
17128 5' -55.7 NC_004333.2 + 12468 0.67 0.624597
Target:  5'- -gGCCGGCacgcccgggucgucaUUCGCGUCCAgCuuGCCGg -3'
miRNA:   3'- cgUGGCUG---------------AAGCGUAGGUaGcgCGGC- -5'
17128 5' -55.7 NC_004333.2 + 12381 0.67 0.6202
Target:  5'- cGCGCgaGGCUggcgCGCAggacgCCGcaaugCGCGCCGc -3'
miRNA:   3'- -CGUGg-CUGAa---GCGUa----GGUa----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11224 0.67 0.609217
Target:  5'- gGCAUCGACUUCGgggauaaAUUCGgguUCGUGCUGc -3'
miRNA:   3'- -CGUGGCUGAAGCg------UAGGU---AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 19624 0.67 0.609217
Target:  5'- cGCGCCGACcgUGCGaCCG--GCGCCc -3'
miRNA:   3'- -CGUGGCUGaaGCGUaGGUagCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 20680 0.67 0.609217
Target:  5'- gGC-CCGACUgCGCGaggCCGagcCGCGCCu -3'
miRNA:   3'- -CGuGGCUGAaGCGUa--GGUa--GCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 46996 0.67 0.6202
Target:  5'- cGCGCgaGGCUUCGCGgcgCUcgCGgCGCUGc -3'
miRNA:   3'- -CGUGg-CUGAAGCGUa--GGuaGC-GCGGC- -5'
17128 5' -55.7 NC_004333.2 + 20355 0.67 0.635593
Target:  5'- cGCgACCGGCUUCGUGaacgCCGUCGaaaaugaaguuaagGCCGu -3'
miRNA:   3'- -CG-UGGCUGAAGCGUa---GGUAGCg-------------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.