miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 9216 1.12 0.000567
Target:  5'- cGCACCGACUUCGCAUCCAUCGCGCCGa -3'
miRNA:   3'- -CGUGGCUGAAGCGUAGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 47637 0.79 0.115813
Target:  5'- cCACCGAUUUCGCA-CCAUCGCcgaguacgGCCGu -3'
miRNA:   3'- cGUGGCUGAAGCGUaGGUAGCG--------CGGC- -5'
17128 5' -55.7 NC_004333.2 + 31306 0.79 0.119109
Target:  5'- gGCGCUGcGCcgCGCggCCGUCGCGCCGg -3'
miRNA:   3'- -CGUGGC-UGaaGCGuaGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 28333 0.79 0.122492
Target:  5'- uCACCGAacaugCGCAUcguaCCAUCGCGCCGa -3'
miRNA:   3'- cGUGGCUgaa--GCGUA----GGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 4146 0.78 0.148777
Target:  5'- gGCGgCGACUUCGCAUCguuUCGCGgCGg -3'
miRNA:   3'- -CGUgGCUGAAGCGUAGgu-AGCGCgGC- -5'
17128 5' -55.7 NC_004333.2 + 31667 0.76 0.180097
Target:  5'- cGgGCCgGACUUCGCAUCCGcCGUGuuGg -3'
miRNA:   3'- -CgUGG-CUGAAGCGUAGGUaGCGCggC- -5'
17128 5' -55.7 NC_004333.2 + 11906 0.76 0.184028
Target:  5'- uGUACCGGCgcaagcuggagCGCG-CCGUCGCGCUGa -3'
miRNA:   3'- -CGUGGCUGaa---------GCGUaGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 25031 0.76 0.190066
Target:  5'- uGCGCCGGaaUCGgguaGUUCGUCGCGCCGu -3'
miRNA:   3'- -CGUGGCUgaAGCg---UAGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 44556 0.75 0.205926
Target:  5'- cGCugCGAUUUCcuuCAUCCAcuUCGCGCCc -3'
miRNA:   3'- -CGugGCUGAAGc--GUAGGU--AGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 22595 0.75 0.222919
Target:  5'- gGCGCuCGugUuguUCGCGUCCGucggguucgUCGCGCCu -3'
miRNA:   3'- -CGUG-GCugA---AGCGUAGGU---------AGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 29281 0.75 0.222919
Target:  5'- -aGCCG-CUuugaUCGCGUCCAUCGCGauCCGg -3'
miRNA:   3'- cgUGGCuGA----AGCGUAGGUAGCGC--GGC- -5'
17128 5' -55.7 NC_004333.2 + 2672 0.75 0.228843
Target:  5'- aCGCCGGCagcUUGCAg-CGUCGCGCCGg -3'
miRNA:   3'- cGUGGCUGa--AGCGUagGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41797 0.75 0.234899
Target:  5'- cGCGCCGAUcUCcuCGUUgAUCGCGCCGu -3'
miRNA:   3'- -CGUGGCUGaAGc-GUAGgUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 37860 0.74 0.24109
Target:  5'- cGCGCCG-CUUCGCAUCC-UUG-GCCu -3'
miRNA:   3'- -CGUGGCuGAAGCGUAGGuAGCgCGGc -5'
17128 5' -55.7 NC_004333.2 + 20557 0.74 0.253879
Target:  5'- cGCGCCG-CUgaucgucggCGCGUCgGgUCGCGCCGu -3'
miRNA:   3'- -CGUGGCuGAa--------GCGUAGgU-AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 4914 0.74 0.253879
Target:  5'- uGCGCCG---UCGcCAUCCAaaacaUCGCGCCGu -3'
miRNA:   3'- -CGUGGCugaAGC-GUAGGU-----AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41906 0.74 0.267219
Target:  5'- uGC-CCGACcgcUCGCGgccgggcgCCGUCGUGCCGu -3'
miRNA:   3'- -CGuGGCUGa--AGCGUa-------GGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 39195 0.73 0.272712
Target:  5'- uGCACCGGCagcacggcccgCGCAUcCCGUCG-GCCGa -3'
miRNA:   3'- -CGUGGCUGaa---------GCGUA-GGUAGCgCGGC- -5'
17128 5' -55.7 NC_004333.2 + 14549 0.73 0.2741
Target:  5'- gGCGuCCGACUUCGUGUUCGUCgGCGUa- -3'
miRNA:   3'- -CGU-GGCUGAAGCGUAGGUAG-CGCGgc -5'
17128 5' -55.7 NC_004333.2 + 227 0.73 0.281121
Target:  5'- gGCGCCGA--UCGUGUgC-UCGCGCCGa -3'
miRNA:   3'- -CGUGGCUgaAGCGUAgGuAGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.