miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 12288 0.73 0.288284
Target:  5'- gGCACCGGCggCGCGcauugcggcgUCCugCGCGCCa -3'
miRNA:   3'- -CGUGGCUGaaGCGU----------AGGuaGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 18616 0.73 0.30304
Target:  5'- cGCGCCGGCUgcCGCAcCCGggUUGCcGCCGg -3'
miRNA:   3'- -CGUGGCUGAa-GCGUaGGU--AGCG-CGGC- -5'
17128 5' -55.7 NC_004333.2 + 2628 0.73 0.310633
Target:  5'- -gACCGACcgCGCgGUUCAUCGCGCUu -3'
miRNA:   3'- cgUGGCUGaaGCG-UAGGUAGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 30889 0.73 0.310633
Target:  5'- cGCAUCGACUgguugaaCGCGUCgAgCGCGUCGa -3'
miRNA:   3'- -CGUGGCUGAa------GCGUAGgUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 32155 0.73 0.310633
Target:  5'- cGCGCCGACgccgaucuaUGCGaUCGUCGCGUCGg -3'
miRNA:   3'- -CGUGGCUGaa-------GCGUaGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 47594 0.72 0.334275
Target:  5'- uGCGuuGGCgagUGCAUUCAauguacuggUCGCGCCGg -3'
miRNA:   3'- -CGUggCUGaa-GCGUAGGU---------AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 43513 0.72 0.334275
Target:  5'- aGCGCgCGAUgcgCGCGUCCGUCaGC-CCGa -3'
miRNA:   3'- -CGUG-GCUGaa-GCGUAGGUAG-CGcGGC- -5'
17128 5' -55.7 NC_004333.2 + 11275 0.72 0.342443
Target:  5'- -gGCCGAgUUCGCGUugCCG-CGCGCUGu -3'
miRNA:   3'- cgUGGCUgAAGCGUA--GGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 30089 0.72 0.350755
Target:  5'- aGCGCCGACggaaCGCGUCgAUgCGCGaCCc -3'
miRNA:   3'- -CGUGGCUGaa--GCGUAGgUA-GCGC-GGc -5'
17128 5' -55.7 NC_004333.2 + 2749 0.72 0.350755
Target:  5'- -aGCCGAgaUCGCggCCGcCGUGCCGg -3'
miRNA:   3'- cgUGGCUgaAGCGuaGGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 33411 0.71 0.359208
Target:  5'- cGCGCCGuuCUcgCGCAacgaaucugaUCCGUggCGCGCCGg -3'
miRNA:   3'- -CGUGGCu-GAa-GCGU----------AGGUA--GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11826 0.71 0.359208
Target:  5'- aGCG-CGACggCGCGcUCCAgcUUGCGCCGg -3'
miRNA:   3'- -CGUgGCUGaaGCGU-AGGU--AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 8926 0.71 0.393516
Target:  5'- cGCgACgCGGCUUCGUucgcgccggcgcuGUCCAUCGCGUg- -3'
miRNA:   3'- -CG-UG-GCUGAAGCG-------------UAGGUAGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 30409 0.71 0.394423
Target:  5'- gGCGCCGGaccgaaUUCGCGcgCCGuagcgacugccUCGCGCCa -3'
miRNA:   3'- -CGUGGCUg-----AAGCGUa-GGU-----------AGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 46185 0.7 0.422259
Target:  5'- gGCgACCGaggGCUgggCGCGUC--UCGCGCCGg -3'
miRNA:   3'- -CG-UGGC---UGAa--GCGUAGguAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 22968 0.7 0.422259
Target:  5'- aGCACCGcGCUUCugcucgucacgaGCG-CCAguacgaUCGCGCCGa -3'
miRNA:   3'- -CGUGGC-UGAAG------------CGUaGGU------AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 32360 0.7 0.422259
Target:  5'- cGCACguCGACaUCGCcgCCGaccCGCGCCa -3'
miRNA:   3'- -CGUG--GCUGaAGCGuaGGUa--GCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 9001 0.7 0.429879
Target:  5'- aGCGCCGGCgcgaacgaagcCGCGUCgcgCAUCGaCGCCa -3'
miRNA:   3'- -CGUGGCUGaa---------GCGUAG---GUAGC-GCGGc -5'
17128 5' -55.7 NC_004333.2 + 9082 0.7 0.435647
Target:  5'- cGCGCCGccuggcaagccgcgaACgcCGCGUCgGUCGCcGCCGc -3'
miRNA:   3'- -CGUGGC---------------UGaaGCGUAGgUAGCG-CGGC- -5'
17128 5' -55.7 NC_004333.2 + 45119 0.7 0.441459
Target:  5'- cGCGCgGugUUCaGCGUuuG-CGCGCCGc -3'
miRNA:   3'- -CGUGgCugAAG-CGUAggUaGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.