Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17128 | 5' | -55.7 | NC_004333.2 | + | 13884 | 0.66 | 0.696818 |
Target: 5'- uCGCCGuCgcUGCGUCUcgCGCGUCa -3' miRNA: 3'- cGUGGCuGaaGCGUAGGuaGCGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 27824 | 0.66 | 0.696818 |
Target: 5'- uGCGCCuGACgggcUCgGCGgccgaCCAgauUCGCGCCGc -3' miRNA: 3'- -CGUGG-CUGa---AG-CGUa----GGU---AGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 41398 | 0.66 | 0.696818 |
Target: 5'- aCACUcGCgcgUCaCGUCCAUCGCgcGCCGg -3' miRNA: 3'- cGUGGcUGa--AGcGUAGGUAGCG--CGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 15206 | 0.66 | 0.693571 |
Target: 5'- -aACCGACgccaagUCGaucaugaaggaaccCGUCUAUCGgGCCGu -3' miRNA: 3'- cgUGGCUGa-----AGC--------------GUAGGUAGCgCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 26721 | 0.66 | 0.685974 |
Target: 5'- cGCGCCGGCcaggaacUUGac-CCAUUGCGUCGg -3' miRNA: 3'- -CGUGGCUGa------AGCguaGGUAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 30293 | 0.66 | 0.685974 |
Target: 5'- aCGgCGAgcUgGCcgCCGUCGCGCCu -3' miRNA: 3'- cGUgGCUgaAgCGuaGGUAGCGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 44912 | 0.66 | 0.685974 |
Target: 5'- aGCugCGuCUcgaUGCGUCgCG-CGCGCCGa -3' miRNA: 3'- -CGugGCuGAa--GCGUAG-GUaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 43438 | 0.66 | 0.685974 |
Target: 5'- cGgGCUGACggacgcgCGCAUCgCGcgcuugCGCGCCGc -3' miRNA: 3'- -CgUGGCUGaa-----GCGUAG-GUa-----GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 15794 | 0.66 | 0.685974 |
Target: 5'- -gAUCGAUcUCgaaGCGUUCgAUCGCGCCGa -3' miRNA: 3'- cgUGGCUGaAG---CGUAGG-UAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 32533 | 0.66 | 0.685974 |
Target: 5'- -uGCCGACgUCGCGcggCgCGcUCGCGUCGa -3' miRNA: 3'- cgUGGCUGaAGCGUa--G-GU-AGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 2398 | 0.66 | 0.685974 |
Target: 5'- gGCGCCGGCggUCGCcuggucgCCGUacagcggcagCGUGCCu -3' miRNA: 3'- -CGUGGCUGa-AGCGua-----GGUA----------GCGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 26495 | 0.66 | 0.685974 |
Target: 5'- cGUGCCGcACgccauuuccgUCGaugaaGUCCggCGCGCCGa -3' miRNA: 3'- -CGUGGC-UGa---------AGCg----UAGGuaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 18258 | 0.66 | 0.685974 |
Target: 5'- cGCGCaCGACgagCGCAUCacccggCaCGCCGg -3' miRNA: 3'- -CGUG-GCUGaa-GCGUAGgua---GcGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 8728 | 0.66 | 0.685974 |
Target: 5'- gGCACCGucACga-GCAagCCGggcgcCGCGCCGa -3' miRNA: 3'- -CGUGGC--UGaagCGUa-GGUa----GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 13179 | 0.66 | 0.684887 |
Target: 5'- uCGCCGACUgggcgcgauacgaUCGUGUgCAggCGCGUCGc -3' miRNA: 3'- cGUGGCUGA-------------AGCGUAgGUa-GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 37782 | 0.66 | 0.671801 |
Target: 5'- -uGCCGACaUCgagcaggccauugaGCcgCCA-CGCGCCGg -3' miRNA: 3'- cgUGGCUGaAG--------------CGuaGGUaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 9690 | 0.66 | 0.664141 |
Target: 5'- cCGCCGGCagccggugCGCAaCCGgccgaugcCGCGCCGg -3' miRNA: 3'- cGUGGCUGaa------GCGUaGGUa-------GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 14944 | 0.66 | 0.664141 |
Target: 5'- aGCGCCu-CUUCaGCAuucUUCGUCGCGCg- -3' miRNA: 3'- -CGUGGcuGAAG-CGU---AGGUAGCGCGgc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 18507 | 0.66 | 0.664141 |
Target: 5'- aCGCCGACggacgcUGCAgcggCCuUCGCaGCCGg -3' miRNA: 3'- cGUGGCUGaa----GCGUa---GGuAGCG-CGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 15408 | 0.66 | 0.664141 |
Target: 5'- uGCGCCGAgaUCGacaaGUUCAUCGaCGaCCu -3' miRNA: 3'- -CGUGGCUgaAGCg---UAGGUAGC-GC-GGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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