miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 11185 0.67 0.6202
Target:  5'- gGCGaggCGAUUUCGUgccgcuGUUCGUCGCGCaCGa -3'
miRNA:   3'- -CGUg--GCUGAAGCG------UAGGUAGCGCG-GC- -5'
17128 5' -55.7 NC_004333.2 + 1576 0.67 0.6202
Target:  5'- -gGCCGAC-UCGCcgUCGcUCGCGCa- -3'
miRNA:   3'- cgUGGCUGaAGCGuaGGU-AGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 30161 0.67 0.6202
Target:  5'- cGCAUCGACg-CGU-UCCGUCgGCGCUa -3'
miRNA:   3'- -CGUGGCUGaaGCGuAGGUAG-CGCGGc -5'
17128 5' -55.7 NC_004333.2 + 46996 0.67 0.6202
Target:  5'- cGCGCgaGGCUUCGCGgcgCUcgCGgCGCUGc -3'
miRNA:   3'- -CGUGg-CUGAAGCGUa--GGuaGC-GCGGC- -5'
17128 5' -55.7 NC_004333.2 + 12381 0.67 0.6202
Target:  5'- cGCGCgaGGCUggcgCGCAggacgCCGcaaugCGCGCCGc -3'
miRNA:   3'- -CGUGg-CUGAa---GCGUa----GGUa----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 18205 0.67 0.6202
Target:  5'- uGCGCgCGGCaUCGCA---AUaCGCGCCGg -3'
miRNA:   3'- -CGUG-GCUGaAGCGUaggUA-GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 20680 0.67 0.609217
Target:  5'- gGC-CCGACUgCGCGaggCCGagcCGCGCCu -3'
miRNA:   3'- -CGuGGCUGAaGCGUa--GGUa--GCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 19624 0.67 0.609217
Target:  5'- cGCGCCGACcgUGCGaCCG--GCGCCc -3'
miRNA:   3'- -CGUGGCUGaaGCGUaGGUagCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 11224 0.67 0.609217
Target:  5'- gGCAUCGACUUCGgggauaaAUUCGgguUCGUGCUGc -3'
miRNA:   3'- -CGUGGCUGAAGCg------UAGGU---AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 8157 0.67 0.609217
Target:  5'- uGUGgCGACaggucggcCGCGUCCAUCGCGUa- -3'
miRNA:   3'- -CGUgGCUGaa------GCGUAGGUAGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 205 0.67 0.587318
Target:  5'- cCGCCGGCUUgGCuugcgCCAUaaaugUGCGUCGg -3'
miRNA:   3'- cGUGGCUGAAgCGua---GGUA-----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 25518 0.67 0.587318
Target:  5'- -gGCCGAg--CGCGUCUugGUaCGCGCCGc -3'
miRNA:   3'- cgUGGCUgaaGCGUAGG--UA-GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 42680 0.67 0.587318
Target:  5'- aGCGCCGA--UCGUcUCCA-CGCcgGCCGa -3'
miRNA:   3'- -CGUGGCUgaAGCGuAGGUaGCG--CGGC- -5'
17128 5' -55.7 NC_004333.2 + 5305 0.67 0.587318
Target:  5'- uUACuCGGCgUUCGgGUCUuUCGCGCCu -3'
miRNA:   3'- cGUG-GCUG-AAGCgUAGGuAGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 8683 0.68 0.57642
Target:  5'- cGCAUCGGCUUCGUg--CAUCGCGaaaUGa -3'
miRNA:   3'- -CGUGGCUGAAGCGuagGUAGCGCg--GC- -5'
17128 5' -55.7 NC_004333.2 + 28532 0.68 0.57642
Target:  5'- cGCGCCGACgcgUGCAUUcccggCAUCGCacguGCUGu -3'
miRNA:   3'- -CGUGGCUGaa-GCGUAG-----GUAGCG----CGGC- -5'
17128 5' -55.7 NC_004333.2 + 19912 0.68 0.569903
Target:  5'- cGCGCCGuc--CGCAUCaucgacgacgagCGCGCCGg -3'
miRNA:   3'- -CGUGGCugaaGCGUAGgua---------GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41512 0.68 0.565568
Target:  5'- -gGCCGACUcgccCGCGUCgAgcaGCGCCu -3'
miRNA:   3'- cgUGGCUGAa---GCGUAGgUag-CGCGGc -5'
17128 5' -55.7 NC_004333.2 + 12993 0.68 0.565568
Target:  5'- cGCAUCGACaaaUCGa--CguUCGCGCCGg -3'
miRNA:   3'- -CGUGGCUGa--AGCguaGguAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 37373 0.68 0.55477
Target:  5'- cGCgACCGACUggaaCGCGUCgccuucgaCAUCGaCGUCGa -3'
miRNA:   3'- -CG-UGGCUGAa---GCGUAG--------GUAGC-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.