miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 205 0.67 0.587318
Target:  5'- cCGCCGGCUUgGCuugcgCCAUaaaugUGCGUCGg -3'
miRNA:   3'- cGUGGCUGAAgCGua---GGUA-----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 227 0.73 0.281121
Target:  5'- gGCGCCGA--UCGUGUgC-UCGCGCCGa -3'
miRNA:   3'- -CGUGGCUgaAGCGUAgGuAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 1142 0.67 0.630095
Target:  5'- uGCGCgCGACgUUGCAcugcauaUCCgAUCGCGgCGg -3'
miRNA:   3'- -CGUG-GCUGaAGCGU-------AGG-UAGCGCgGC- -5'
17128 5' -55.7 NC_004333.2 + 1185 0.69 0.481284
Target:  5'- gGCACCGACUUCGCGcgCgAcUGCGaCGu -3'
miRNA:   3'- -CGUGGCUGAAGCGUa-GgUaGCGCgGC- -5'
17128 5' -55.7 NC_004333.2 + 1576 0.67 0.6202
Target:  5'- -gGCCGAC-UCGCcgUCGcUCGCGCa- -3'
miRNA:   3'- cgUGGCUGaAGCGuaGGU-AGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 1621 0.7 0.441459
Target:  5'- -gGCCGGCUUCGUGUUCAacgagGUGCCGc -3'
miRNA:   3'- cgUGGCUGAAGCGUAGGUag---CGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 2398 0.66 0.685974
Target:  5'- gGCGCCGGCggUCGCcuggucgCCGUacagcggcagCGUGCCu -3'
miRNA:   3'- -CGUGGCUGa-AGCGua-----GGUA----------GCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 2628 0.73 0.310633
Target:  5'- -gACCGACcgCGCgGUUCAUCGCGCUu -3'
miRNA:   3'- cgUGGCUGaaGCG-UAGGUAGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 2672 0.75 0.228843
Target:  5'- aCGCCGGCagcUUGCAg-CGUCGCGCCGg -3'
miRNA:   3'- cGUGGCUGa--AGCGUagGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 2749 0.72 0.350755
Target:  5'- -aGCCGAgaUCGCggCCGcCGUGCCGg -3'
miRNA:   3'- cgUGGCUgaAGCGuaGGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 3387 0.67 0.631194
Target:  5'- -gACCGGCgUCGCcgUCGUCGCGg-- -3'
miRNA:   3'- cgUGGCUGaAGCGuaGGUAGCGCggc -5'
17128 5' -55.7 NC_004333.2 + 4146 0.78 0.148777
Target:  5'- gGCGgCGACUUCGCAUCguuUCGCGgCGg -3'
miRNA:   3'- -CGUgGCUGAAGCGUAGgu-AGCGCgGC- -5'
17128 5' -55.7 NC_004333.2 + 4914 0.74 0.253879
Target:  5'- uGCGCCG---UCGcCAUCCAaaacaUCGCGCCGu -3'
miRNA:   3'- -CGUGGCugaAGC-GUAGGU-----AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 5305 0.67 0.587318
Target:  5'- uUACuCGGCgUUCGgGUCUuUCGCGCCu -3'
miRNA:   3'- cGUG-GCUG-AAGCgUAGGuAGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 5395 0.67 0.630095
Target:  5'- gGCGuuGACcugUUCGCGUucuucugCCAUCGCGgCa -3'
miRNA:   3'- -CGUggCUG---AAGCGUA-------GGUAGCGCgGc -5'
17128 5' -55.7 NC_004333.2 + 6586 0.68 0.544033
Target:  5'- aGC-CCG-CaUCGCcgCCAcggCGCGCCGc -3'
miRNA:   3'- -CGuGGCuGaAGCGuaGGUa--GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 6616 0.69 0.491512
Target:  5'- aGCGCCGcagUCGCAgguaaucaacUCgAUCGCGCuCGg -3'
miRNA:   3'- -CGUGGCugaAGCGU----------AGgUAGCGCG-GC- -5'
17128 5' -55.7 NC_004333.2 + 6782 0.68 0.522773
Target:  5'- -aGCCGA--UCGCAUacgaCAgCGCGCCGa -3'
miRNA:   3'- cgUGGCUgaAGCGUAg---GUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 7854 0.68 0.522773
Target:  5'- uGCGCCGGCcauuuccagcUCGCGcucgccCCAUCGCGUCc -3'
miRNA:   3'- -CGUGGCUGa---------AGCGUa-----GGUAGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 8157 0.67 0.609217
Target:  5'- uGUGgCGACaggucggcCGCGUCCAUCGCGUa- -3'
miRNA:   3'- -CGUgGCUGaa------GCGUAGGUAGCGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.