miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 8683 0.68 0.57642
Target:  5'- cGCAUCGGCUUCGUg--CAUCGCGaaaUGa -3'
miRNA:   3'- -CGUGGCUGAAGCGuagGUAGCGCg--GC- -5'
17128 5' -55.7 NC_004333.2 + 8728 0.66 0.685974
Target:  5'- gGCACCGucACga-GCAagCCGggcgcCGCGCCGa -3'
miRNA:   3'- -CGUGGC--UGaagCGUa-GGUa----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 8926 0.71 0.393516
Target:  5'- cGCgACgCGGCUUCGUucgcgccggcgcuGUCCAUCGCGUg- -3'
miRNA:   3'- -CG-UG-GCUGAAGCG-------------UAGGUAGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 9001 0.7 0.429879
Target:  5'- aGCGCCGGCgcgaacgaagcCGCGUCgcgCAUCGaCGCCa -3'
miRNA:   3'- -CGUGGCUGaa---------GCGUAG---GUAGC-GCGGc -5'
17128 5' -55.7 NC_004333.2 + 9082 0.7 0.435647
Target:  5'- cGCGCCGccuggcaagccgcgaACgcCGCGUCgGUCGCcGCCGc -3'
miRNA:   3'- -CGUGGC---------------UGaaGCGUAGgUAGCG-CGGC- -5'
17128 5' -55.7 NC_004333.2 + 9216 1.12 0.000567
Target:  5'- cGCACCGACUUCGCAUCCAUCGCGCCGa -3'
miRNA:   3'- -CGUGGCUGAAGCGUAGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 9626 0.68 0.544033
Target:  5'- cGCACCGGCUgccggcggCGCG-CC--UGCGCCc -3'
miRNA:   3'- -CGUGGCUGAa-------GCGUaGGuaGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 9690 0.66 0.664141
Target:  5'- cCGCCGGCagccggugCGCAaCCGgccgaugcCGCGCCGg -3'
miRNA:   3'- cGUGGCUGaa------GCGUaGGUa-------GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 9749 0.69 0.501841
Target:  5'- aGCGCCGGaugCGCGcCCGUCgucaacgaGCGCCa -3'
miRNA:   3'- -CGUGGCUgaaGCGUaGGUAG--------CGCGGc -5'
17128 5' -55.7 NC_004333.2 + 9791 0.67 0.630095
Target:  5'- uCGCCGACgcggcguUUCGCGaaCCGcgUGCGCCGa -3'
miRNA:   3'- cGUGGCUG-------AAGCGUa-GGUa-GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 10736 0.67 0.635593
Target:  5'- uGCACCGGCcggCGCGaCCGugacgucaccuuucuUCGcCGCCa -3'
miRNA:   3'- -CGUGGCUGaa-GCGUaGGU---------------AGC-GCGGc -5'
17128 5' -55.7 NC_004333.2 + 10970 0.7 0.451243
Target:  5'- cGCACUGuCgucggCGCAagugaCUGUCGCGCCGg -3'
miRNA:   3'- -CGUGGCuGaa---GCGUa----GGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11185 0.67 0.6202
Target:  5'- gGCGaggCGAUUUCGUgccgcuGUUCGUCGCGCaCGa -3'
miRNA:   3'- -CGUg--GCUGAAGCG------UAGGUAGCGCG-GC- -5'
17128 5' -55.7 NC_004333.2 + 11224 0.67 0.609217
Target:  5'- gGCAUCGACUUCGgggauaaAUUCGgguUCGUGCUGc -3'
miRNA:   3'- -CGUGGCUGAAGCg------UAGGU---AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11275 0.72 0.342443
Target:  5'- -gGCCGAgUUCGCGUugCCG-CGCGCUGu -3'
miRNA:   3'- cgUGGCUgAAGCGUA--GGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11584 0.66 0.664141
Target:  5'- uGCGCUGAUUgUCGacguacaaAUCCugaaaCGCGCCGg -3'
miRNA:   3'- -CGUGGCUGA-AGCg-------UAGGua---GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11756 0.67 0.632294
Target:  5'- gGCACCGACguucaccuugagugCGCGaCCAuacUUGCGCuCGa -3'
miRNA:   3'- -CGUGGCUGaa------------GCGUaGGU---AGCGCG-GC- -5'
17128 5' -55.7 NC_004333.2 + 11826 0.71 0.359208
Target:  5'- aGCG-CGACggCGCGcUCCAgcUUGCGCCGg -3'
miRNA:   3'- -CGUgGCUGaaGCGU-AGGU--AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11906 0.76 0.184028
Target:  5'- uGUACCGGCgcaagcuggagCGCG-CCGUCGCGCUGa -3'
miRNA:   3'- -CGUGGCUGaa---------GCGUaGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 12139 0.66 0.646585
Target:  5'- uCGCCGuCguggUCGUAgCCAguuuccucucgugucUCGCGCCGa -3'
miRNA:   3'- cGUGGCuGa---AGCGUaGGU---------------AGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.