miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 48034 0.68 0.55477
Target:  5'- cCGCCGAUgaCGCcgacgaCCAgCGCGCCGa -3'
miRNA:   3'- cGUGGCUGaaGCGua----GGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 47637 0.79 0.115813
Target:  5'- cCACCGAUUUCGCA-CCAUCGCcgaguacgGCCGu -3'
miRNA:   3'- cGUGGCUGAAGCGUaGGUAGCG--------CGGC- -5'
17128 5' -55.7 NC_004333.2 + 47594 0.72 0.334275
Target:  5'- uGCGuuGGCgagUGCAUUCAauguacuggUCGCGCCGg -3'
miRNA:   3'- -CGUggCUGaa-GCGUAGGU---------AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 47472 0.66 0.650979
Target:  5'- cGCGCCGGCggcgacugccgCGCugaaCGagGCGCCGg -3'
miRNA:   3'- -CGUGGCUGaa---------GCGuag-GUagCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 47471 0.7 0.461144
Target:  5'- aGCugCGAUUgcuugCGCGUCgGUCgGCGCUu -3'
miRNA:   3'- -CGugGCUGAa----GCGUAGgUAG-CGCGGc -5'
17128 5' -55.7 NC_004333.2 + 47394 0.68 0.54832
Target:  5'- aGCGCCGACcgacgcgcaagcaaUCGCAgcuaCAUCGCcgcucGCCGg -3'
miRNA:   3'- -CGUGGCUGa-------------AGCGUag--GUAGCG-----CGGC- -5'
17128 5' -55.7 NC_004333.2 + 46996 0.67 0.6202
Target:  5'- cGCGCgaGGCUUCGCGgcgCUcgCGgCGCUGc -3'
miRNA:   3'- -CGUGg-CUGAAGCGUa--GGuaGC-GCGGC- -5'
17128 5' -55.7 NC_004333.2 + 46928 0.67 0.6202
Target:  5'- aGCGCCGcgaaGCcUCGCGcgcagCCAaggcggcgCGCGCCGa -3'
miRNA:   3'- -CGUGGC----UGaAGCGUa----GGUa-------GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 46756 0.68 0.544033
Target:  5'- cGCACuCGGCgUCGaaguGUCCGcCGCGCUGc -3'
miRNA:   3'- -CGUG-GCUGaAGCg---UAGGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 46185 0.7 0.422259
Target:  5'- gGCgACCGaggGCUgggCGCGUC--UCGCGCCGg -3'
miRNA:   3'- -CG-UGGC---UGAa--GCGUAGguAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 45119 0.7 0.441459
Target:  5'- cGCGCgGugUUCaGCGUuuG-CGCGCCGc -3'
miRNA:   3'- -CGUGgCugAAG-CGUAggUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 44912 0.66 0.685974
Target:  5'- aGCugCGuCUcgaUGCGUCgCG-CGCGCCGa -3'
miRNA:   3'- -CGugGCuGAa--GCGUAG-GUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 44556 0.75 0.205926
Target:  5'- cGCugCGAUUUCcuuCAUCCAcuUCGCGCCc -3'
miRNA:   3'- -CGugGCUGAAGc--GUAGGU--AGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 43513 0.72 0.334275
Target:  5'- aGCGCgCGAUgcgCGCGUCCGUCaGC-CCGa -3'
miRNA:   3'- -CGUG-GCUGaa-GCGUAGGUAG-CGcGGC- -5'
17128 5' -55.7 NC_004333.2 + 43438 0.66 0.685974
Target:  5'- cGgGCUGACggacgcgCGCAUCgCGcgcuugCGCGCCGc -3'
miRNA:   3'- -CgUGGCUGaa-----GCGUAG-GUa-----GCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 43229 0.68 0.533366
Target:  5'- cGUGCCGuGCgUUCGCAUgCC--CGCGCCGc -3'
miRNA:   3'- -CGUGGC-UG-AAGCGUA-GGuaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 42680 0.67 0.587318
Target:  5'- aGCGCCGA--UCGUcUCCA-CGCcgGCCGa -3'
miRNA:   3'- -CGUGGCUgaAGCGuAGGUaGCG--CGGC- -5'
17128 5' -55.7 NC_004333.2 + 41906 0.74 0.267219
Target:  5'- uGC-CCGACcgcUCGCGgccgggcgCCGUCGUGCCGu -3'
miRNA:   3'- -CGuGGCUGa--AGCGUa-------GGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41797 0.75 0.234899
Target:  5'- cGCGCCGAUcUCcuCGUUgAUCGCGCCGu -3'
miRNA:   3'- -CGUGGCUGaAGc-GUAGgUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 41512 0.68 0.565568
Target:  5'- -gGCCGACUcgccCGCGUCgAgcaGCGCCu -3'
miRNA:   3'- cgUGGCUGAa---GCGUAGgUag-CGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.