miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17128 5' -55.7 NC_004333.2 + 9216 1.12 0.000567
Target:  5'- cGCACCGACUUCGCAUCCAUCGCGCCGa -3'
miRNA:   3'- -CGUGGCUGAAGCGUAGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 8926 0.71 0.393516
Target:  5'- cGCgACgCGGCUUCGUucgcgccggcgcuGUCCAUCGCGUg- -3'
miRNA:   3'- -CG-UG-GCUGAAGCG-------------UAGGUAGCGCGgc -5'
17128 5' -55.7 NC_004333.2 + 46185 0.7 0.422259
Target:  5'- gGCgACCGaggGCUgggCGCGUC--UCGCGCCGg -3'
miRNA:   3'- -CG-UGGC---UGAa--GCGUAGguAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 44912 0.66 0.685974
Target:  5'- aGCugCGuCUcgaUGCGUCgCG-CGCGCCGa -3'
miRNA:   3'- -CGugGCuGAa--GCGUAG-GUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 29281 0.75 0.222919
Target:  5'- -aGCCG-CUuugaUCGCGUCCAUCGCGauCCGg -3'
miRNA:   3'- cgUGGCuGA----AGCGUAGGUAGCGC--GGC- -5'
17128 5' -55.7 NC_004333.2 + 22595 0.75 0.222919
Target:  5'- gGCGCuCGugUuguUCGCGUCCGucggguucgUCGCGCCu -3'
miRNA:   3'- -CGUG-GCugA---AGCGUAGGU---------AGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 4914 0.74 0.253879
Target:  5'- uGCGCCG---UCGcCAUCCAaaacaUCGCGCCGu -3'
miRNA:   3'- -CGUGGCugaAGC-GUAGGU-----AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 20557 0.74 0.253879
Target:  5'- cGCGCCG-CUgaucgucggCGCGUCgGgUCGCGCCGu -3'
miRNA:   3'- -CGUGGCuGAa--------GCGUAGgU-AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 2628 0.73 0.310633
Target:  5'- -gACCGACcgCGCgGUUCAUCGCGCUu -3'
miRNA:   3'- cgUGGCUGaaGCG-UAGGUAGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 11826 0.71 0.359208
Target:  5'- aGCG-CGACggCGCGcUCCAgcUUGCGCCGg -3'
miRNA:   3'- -CGUgGCUGaaGCGU-AGGU--AGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 11275 0.72 0.342443
Target:  5'- -gGCCGAgUUCGCGUugCCG-CGCGCUGu -3'
miRNA:   3'- cgUGGCUgAAGCGUA--GGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 12288 0.73 0.288284
Target:  5'- gGCACCGGCggCGCGcauugcggcgUCCugCGCGCCa -3'
miRNA:   3'- -CGUGGCUGaaGCGU----------AGGuaGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 28333 0.79 0.122492
Target:  5'- uCACCGAacaugCGCAUcguaCCAUCGCGCCGa -3'
miRNA:   3'- cGUGGCUgaa--GCGUA----GGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 2749 0.72 0.350755
Target:  5'- -aGCCGAgaUCGCggCCGcCGUGCCGg -3'
miRNA:   3'- cgUGGCUgaAGCGuaGGUaGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 31667 0.76 0.180097
Target:  5'- cGgGCCgGACUUCGCAUCCGcCGUGuuGg -3'
miRNA:   3'- -CgUGG-CUGAAGCGUAGGUaGCGCggC- -5'
17128 5' -55.7 NC_004333.2 + 39195 0.73 0.272712
Target:  5'- uGCACCGGCagcacggcccgCGCAUcCCGUCG-GCCGa -3'
miRNA:   3'- -CGUGGCUGaa---------GCGUA-GGUAGCgCGGC- -5'
17128 5' -55.7 NC_004333.2 + 30089 0.72 0.350755
Target:  5'- aGCGCCGACggaaCGCGUCgAUgCGCGaCCc -3'
miRNA:   3'- -CGUGGCUGaa--GCGUAGgUA-GCGC-GGc -5'
17128 5' -55.7 NC_004333.2 + 30409 0.71 0.394423
Target:  5'- gGCGCCGGaccgaaUUCGCGcgCCGuagcgacugccUCGCGCCa -3'
miRNA:   3'- -CGUGGCUg-----AAGCGUa-GGU-----------AGCGCGGc -5'
17128 5' -55.7 NC_004333.2 + 25031 0.76 0.190066
Target:  5'- uGCGCCGGaaUCGgguaGUUCGUCGCGCCGu -3'
miRNA:   3'- -CGUGGCUgaAGCg---UAGGUAGCGCGGC- -5'
17128 5' -55.7 NC_004333.2 + 2672 0.75 0.228843
Target:  5'- aCGCCGGCagcUUGCAg-CGUCGCGCCGg -3'
miRNA:   3'- cGUGGCUGa--AGCGUagGUAGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.