Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17128 | 5' | -55.7 | NC_004333.2 | + | 22790 | 0.7 | 0.441459 |
Target: 5'- uGCGCCGcACgUUGCGUaccagguguUCGUCGCGCUGu -3' miRNA: 3'- -CGUGGC-UGaAGCGUA---------GGUAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 46185 | 0.7 | 0.422259 |
Target: 5'- gGCgACCGaggGCUgggCGCGUC--UCGCGCCGg -3' miRNA: 3'- -CG-UGGC---UGAa--GCGUAGguAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 12288 | 0.73 | 0.288284 |
Target: 5'- gGCACCGGCggCGCGcauugcggcgUCCugCGCGCCa -3' miRNA: 3'- -CGUGGCUGaaGCGU----------AGGuaGCGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 25031 | 0.76 | 0.190066 |
Target: 5'- uGCGCCGGaaUCGgguaGUUCGUCGCGCCGu -3' miRNA: 3'- -CGUGGCUgaAGCg---UAGGUAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 17508 | 0.68 | 0.529119 |
Target: 5'- cGCACCGACcugcugcagccggUCGCAcugUCCGaagcgaUCGCGCa- -3' miRNA: 3'- -CGUGGCUGa------------AGCGU---AGGU------AGCGCGgc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 9749 | 0.69 | 0.501841 |
Target: 5'- aGCGCCGGaugCGCGcCCGUCgucaacgaGCGCCa -3' miRNA: 3'- -CGUGGCUgaaGCGUaGGUAG--------CGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 8926 | 0.71 | 0.393516 |
Target: 5'- cGCgACgCGGCUUCGUucgcgccggcgcuGUCCAUCGCGUg- -3' miRNA: 3'- -CG-UG-GCUGAAGCG-------------UAGGUAGCGCGgc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 31667 | 0.76 | 0.180097 |
Target: 5'- cGgGCCgGACUUCGCAUCCGcCGUGuuGg -3' miRNA: 3'- -CgUGG-CUGAAGCGUAGGUaGCGCggC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 27253 | 0.69 | 0.498732 |
Target: 5'- uGCGCCGACgccUCGUAUUCGgacuggcugaacggUCGCcacgaGCCGg -3' miRNA: 3'- -CGUGGCUGa--AGCGUAGGU--------------AGCG-----CGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 28333 | 0.79 | 0.122492 |
Target: 5'- uCACCGAacaugCGCAUcguaCCAUCGCGCCGa -3' miRNA: 3'- cGUGGCUgaa--GCGUA----GGUAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 30409 | 0.71 | 0.394423 |
Target: 5'- gGCGCCGGaccgaaUUCGCGcgCCGuagcgacugccUCGCGCCa -3' miRNA: 3'- -CGUGGCUg-----AAGCGUa-GGU-----------AGCGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 26562 | 0.69 | 0.471159 |
Target: 5'- cGCGCCGGuCUUCGUcccugCgAUCGUGUCGu -3' miRNA: 3'- -CGUGGCU-GAAGCGua---GgUAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 2749 | 0.72 | 0.350755 |
Target: 5'- -aGCCGAgaUCGCggCCGcCGUGCCGg -3' miRNA: 3'- cgUGGCUgaAGCGuaGGUaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 2628 | 0.73 | 0.310633 |
Target: 5'- -gACCGACcgCGCgGUUCAUCGCGCUu -3' miRNA: 3'- cgUGGCUGaaGCG-UAGGUAGCGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 4914 | 0.74 | 0.253879 |
Target: 5'- uGCGCCG---UCGcCAUCCAaaacaUCGCGCCGu -3' miRNA: 3'- -CGUGGCugaAGC-GUAGGU-----AGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 29281 | 0.75 | 0.222919 |
Target: 5'- -aGCCG-CUuugaUCGCGUCCAUCGCGauCCGg -3' miRNA: 3'- cgUGGCuGA----AGCGUAGGUAGCGC--GGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 6586 | 0.68 | 0.544033 |
Target: 5'- aGC-CCG-CaUCGCcgCCAcggCGCGCCGc -3' miRNA: 3'- -CGuGGCuGaAGCGuaGGUa--GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 37994 | 0.68 | 0.533366 |
Target: 5'- aGCACUGcccGCgUCGCucggcuUCCAgUGCGCCGa -3' miRNA: 3'- -CGUGGC---UGaAGCGu-----AGGUaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 6782 | 0.68 | 0.522773 |
Target: 5'- -aGCCGA--UCGCAUacgaCAgCGCGCCGa -3' miRNA: 3'- cgUGGCUgaAGCGUAg---GUaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 13717 | 0.69 | 0.501841 |
Target: 5'- ---aCGAUagCGCGUCCAugcUCGUGCCGu -3' miRNA: 3'- cgugGCUGaaGCGUAGGU---AGCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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