Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17128 | 5' | -55.7 | NC_004333.2 | + | 46996 | 0.67 | 0.6202 |
Target: 5'- cGCGCgaGGCUUCGCGgcgCUcgCGgCGCUGc -3' miRNA: 3'- -CGUGg-CUGAAGCGUa--GGuaGC-GCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 10736 | 0.67 | 0.635593 |
Target: 5'- uGCACCGGCcggCGCGaCCGugacgucaccuuucuUCGcCGCCa -3' miRNA: 3'- -CGUGGCUGaa-GCGUaGGU---------------AGC-GCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 39732 | 0.67 | 0.634493 |
Target: 5'- cGCGCCGcCUcggcgaccgugaaguUCGCGUCCggcagcaGUCG-GCCGc -3' miRNA: 3'- -CGUGGCuGA---------------AGCGUAGG-------UAGCgCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 19566 | 0.67 | 0.631194 |
Target: 5'- aGCGCCGcCagCGCG-CCA--GCGCCGa -3' miRNA: 3'- -CGUGGCuGaaGCGUaGGUagCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 32531 | 0.67 | 0.631194 |
Target: 5'- uGCugCGGCUcgUCGCGgcgCUgaAggGCGCCGa -3' miRNA: 3'- -CGugGCUGA--AGCGUa--GG--UagCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 9791 | 0.67 | 0.630095 |
Target: 5'- uCGCCGACgcggcguUUCGCGaaCCGcgUGCGCCGa -3' miRNA: 3'- cGUGGCUG-------AAGCGUa-GGUa-GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 11185 | 0.67 | 0.6202 |
Target: 5'- gGCGaggCGAUUUCGUgccgcuGUUCGUCGCGCaCGa -3' miRNA: 3'- -CGUg--GCUGAAGCG------UAGGUAGCGCG-GC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 1576 | 0.67 | 0.6202 |
Target: 5'- -gGCCGAC-UCGCcgUCGcUCGCGCa- -3' miRNA: 3'- cgUGGCUGaAGCGuaGGU-AGCGCGgc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 30161 | 0.67 | 0.6202 |
Target: 5'- cGCAUCGACg-CGU-UCCGUCgGCGCUa -3' miRNA: 3'- -CGUGGCUGaaGCGuAGGUAG-CGCGGc -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 37260 | 0.66 | 0.64109 |
Target: 5'- gGCACCGGCg-CGCGUCgugagcggcguguCGcCGCGCUGc -3' miRNA: 3'- -CGUGGCUGaaGCGUAG-------------GUaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 20531 | 0.66 | 0.648782 |
Target: 5'- -aACCGGCUgcgucacgaccggCGCAggCuUCGCGCCGc -3' miRNA: 3'- cgUGGCUGAa------------GCGUagGuAGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 20016 | 0.66 | 0.653175 |
Target: 5'- aGCACuCGACggcggcUCGCcgCCcggCGCGCuCGu -3' miRNA: 3'- -CGUG-GCUGa-----AGCGuaGGua-GCGCG-GC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 27824 | 0.66 | 0.696818 |
Target: 5'- uGCGCCuGACgggcUCgGCGgccgaCCAgauUCGCGCCGc -3' miRNA: 3'- -CGUGG-CUGa---AG-CGUa----GGU---AGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 41398 | 0.66 | 0.696818 |
Target: 5'- aCACUcGCgcgUCaCGUCCAUCGCgcGCCGg -3' miRNA: 3'- cGUGGcUGa--AGcGUAGGUAGCG--CGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 15206 | 0.66 | 0.693571 |
Target: 5'- -aACCGACgccaagUCGaucaugaaggaaccCGUCUAUCGgGCCGu -3' miRNA: 3'- cgUGGCUGa-----AGC--------------GUAGGUAGCgCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 18258 | 0.66 | 0.685974 |
Target: 5'- cGCGCaCGACgagCGCAUCacccggCaCGCCGg -3' miRNA: 3'- -CGUG-GCUGaa-GCGUAGgua---GcGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 8728 | 0.66 | 0.685974 |
Target: 5'- gGCACCGucACga-GCAagCCGggcgcCGCGCCGa -3' miRNA: 3'- -CGUGGC--UGaagCGUa-GGUa----GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 37782 | 0.66 | 0.671801 |
Target: 5'- -uGCCGACaUCgagcaggccauugaGCcgCCA-CGCGCCGg -3' miRNA: 3'- cgUGGCUGaAG--------------CGuaGGUaGCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 9690 | 0.66 | 0.664141 |
Target: 5'- cCGCCGGCagccggugCGCAaCCGgccgaugcCGCGCCGg -3' miRNA: 3'- cGUGGCUGaa------GCGUaGGUa-------GCGCGGC- -5' |
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17128 | 5' | -55.7 | NC_004333.2 | + | 15408 | 0.66 | 0.664141 |
Target: 5'- uGCGCCGAgaUCGacaaGUUCAUCGaCGaCCu -3' miRNA: 3'- -CGUGGCUgaAGCg---UAGGUAGC-GC-GGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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