miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17129 3' -59.4 NC_004333.2 + 6888 0.66 0.490035
Target:  5'- cCGCCGGA-GUGC-CgCCGUUG-CGACa -3'
miRNA:   3'- cGCGGCCUaCGCGcG-GGCAGCaGUUG- -5'
17129 3' -59.4 NC_004333.2 + 33377 0.66 0.490035
Target:  5'- cGCGCCGGuugGCucgauGCGgCCGaCG-CAACg -3'
miRNA:   3'- -CGCGGCCua-CG-----CGCgGGCaGCaGUUG- -5'
17129 3' -59.4 NC_004333.2 + 39886 0.66 0.490035
Target:  5'- gGCaGCCGGGuaUGCGCGUUCGgaCGgccaCAGCg -3'
miRNA:   3'- -CG-CGGCCU--ACGCGCGGGCa-GCa---GUUG- -5'
17129 3' -59.4 NC_004333.2 + 8943 0.66 0.489032
Target:  5'- cGCGCCGGcgcuguccaucgcGUGCGCggGCUgGaUCGUgGGCc -3'
miRNA:   3'- -CGCGGCC-------------UACGCG--CGGgC-AGCAgUUG- -5'
17129 3' -59.4 NC_004333.2 + 20811 0.66 0.48104
Target:  5'- cGCGUCGGcgauguccggcagcGCGCGCgCCGUCaUCAccGCa -3'
miRNA:   3'- -CGCGGCCua------------CGCGCG-GGCAGcAGU--UG- -5'
17129 3' -59.4 NC_004333.2 + 32342 0.66 0.480045
Target:  5'- gGCuGCCGGGU-CGCuGCCCGauagCGUgcgCAGCa -3'
miRNA:   3'- -CG-CGGCCUAcGCG-CGGGCa---GCA---GUUG- -5'
17129 3' -59.4 NC_004333.2 + 42949 0.66 0.480045
Target:  5'- uCGCCgGGAUGCGCugcaaCCCGcacccUCGcCGGCg -3'
miRNA:   3'- cGCGG-CCUACGCGc----GGGC-----AGCaGUUG- -5'
17129 3' -59.4 NC_004333.2 + 10266 0.66 0.480045
Target:  5'- -gGCCGcAUGCGCGUgCGcgacugcaucUUGUCGACg -3'
miRNA:   3'- cgCGGCcUACGCGCGgGC----------AGCAGUUG- -5'
17129 3' -59.4 NC_004333.2 + 35793 0.66 0.479052
Target:  5'- cCGCCGGAUGCcguuauuGUGCCUGa-GcCGACa -3'
miRNA:   3'- cGCGGCCUACG-------CGCGGGCagCaGUUG- -5'
17129 3' -59.4 NC_004333.2 + 45785 0.66 0.479052
Target:  5'- cGCGCCGGGcucgagaUGCagGCGUgCGUUGUggUAGCu -3'
miRNA:   3'- -CGCGGCCU-------ACG--CGCGgGCAGCA--GUUG- -5'
17129 3' -59.4 NC_004333.2 + 11785 0.66 0.470156
Target:  5'- cGCGCaGGAcGCcagcacgcCGCCCGgcgcugCGUCGACg -3'
miRNA:   3'- -CGCGgCCUaCGc-------GCGGGCa-----GCAGUUG- -5'
17129 3' -59.4 NC_004333.2 + 45125 0.66 0.460371
Target:  5'- uGCGCgGcGAUcGCGCcuaCCUGUCGUCGc- -3'
miRNA:   3'- -CGCGgC-CUA-CGCGc--GGGCAGCAGUug -5'
17129 3' -59.4 NC_004333.2 + 4901 0.66 0.460371
Target:  5'- cGCGCUGcGAUaGUGCGCC-GUCGcCAu- -3'
miRNA:   3'- -CGCGGC-CUA-CGCGCGGgCAGCaGUug -5'
17129 3' -59.4 NC_004333.2 + 3651 0.66 0.460371
Target:  5'- uCGCCGcGAUGUgGCGCacuaUGUgGUCGGCc -3'
miRNA:   3'- cGCGGC-CUACG-CGCGg---GCAgCAGUUG- -5'
17129 3' -59.4 NC_004333.2 + 38611 0.66 0.460371
Target:  5'- -aGCCGGgcGCGCcgcuGCCCGUgGUg--- -3'
miRNA:   3'- cgCGGCCuaCGCG----CGGGCAgCAguug -5'
17129 3' -59.4 NC_004333.2 + 11967 0.66 0.457457
Target:  5'- aUGCCGGGccgcgacgacaaggUGCucGCGCCCGUU-UCGGCc -3'
miRNA:   3'- cGCGGCCU--------------ACG--CGCGGGCAGcAGUUG- -5'
17129 3' -59.4 NC_004333.2 + 29836 0.66 0.454553
Target:  5'- cGCGCCGccagucgacuGAUcguucgcagcgaagcGCGCGCgguaGUCGUCGGCg -3'
miRNA:   3'- -CGCGGC----------CUA---------------CGCGCGgg--CAGCAGUUG- -5'
17129 3' -59.4 NC_004333.2 + 31083 0.66 0.450695
Target:  5'- aGCGCCuGcagGUucgGCGCCUGgccCGUCAGCg -3'
miRNA:   3'- -CGCGGcCua-CG---CGCGGGCa--GCAGUUG- -5'
17129 3' -59.4 NC_004333.2 + 15418 0.66 0.450695
Target:  5'- aCGCCGcGAaguucgUGCGCGCCagGUUgaugaggaaGUCAACg -3'
miRNA:   3'- cGCGGC-CU------ACGCGCGGg-CAG---------CAGUUG- -5'
17129 3' -59.4 NC_004333.2 + 23961 0.66 0.450695
Target:  5'- cCGCCGGGUGCGggaacagGCCCGaC-UCGAUg -3'
miRNA:   3'- cGCGGCCUACGCg------CGGGCaGcAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.