miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17130 3' -54.1 NC_004333.2 + 43716 0.66 0.772405
Target:  5'- cGAUCcugGUGGUGCAGGcCG--GACGCa- -3'
miRNA:   3'- -CUAG---CGCCAUGUCCaGCauCUGCGcu -5'
17130 3' -54.1 NC_004333.2 + 20409 0.66 0.762141
Target:  5'- cGGUCGCGGUACccGUCGgcacGGC-CGGc -3'
miRNA:   3'- -CUAGCGCCAUGucCAGCau--CUGcGCU- -5'
17130 3' -54.1 NC_004333.2 + 30390 0.66 0.751742
Target:  5'- --cCGCGcGUaugGCGGGUgGUgucgcAGGCGCGAc -3'
miRNA:   3'- cuaGCGC-CA---UGUCCAgCA-----UCUGCGCU- -5'
17130 3' -54.1 NC_004333.2 + 40770 0.66 0.751742
Target:  5'- cGAUCGCGGcgauCGGGUUGguguucuuugcGGuCGCGAg -3'
miRNA:   3'- -CUAGCGCCau--GUCCAGCa----------UCuGCGCU- -5'
17130 3' -54.1 NC_004333.2 + 2005 0.67 0.709015
Target:  5'- cGUCGcCGGUGCGGGccagcUgGUgcAGACGCGu -3'
miRNA:   3'- cUAGC-GCCAUGUCC-----AgCA--UCUGCGCu -5'
17130 3' -54.1 NC_004333.2 + 19487 0.68 0.665052
Target:  5'- cGUCGCGGguaGCGcGG-CGUAGGCGUa- -3'
miRNA:   3'- cUAGCGCCa--UGU-CCaGCAUCUGCGcu -5'
17130 3' -54.1 NC_004333.2 + 38218 0.68 0.642837
Target:  5'- aGAUCgGCGGc-CGGGUCGgcGucgaACGCGAa -3'
miRNA:   3'- -CUAG-CGCCauGUCCAGCauC----UGCGCU- -5'
17130 3' -54.1 NC_004333.2 + 22981 0.7 0.511358
Target:  5'- cGUCGCGGUACcGGUCGccgAGAgcaggaaGCGGa -3'
miRNA:   3'- cUAGCGCCAUGuCCAGCa--UCUg------CGCU- -5'
17130 3' -54.1 NC_004333.2 + 25762 0.73 0.374288
Target:  5'- cGGUUGCGGgACGuuGGUCGUGGucaugcGCGCGAu -3'
miRNA:   3'- -CUAGCGCCaUGU--CCAGCAUC------UGCGCU- -5'
17130 3' -54.1 NC_004333.2 + 35258 0.73 0.339941
Target:  5'- uGGUCGaaacuGUGCAGGuggcguUCGUAGACGCGGg -3'
miRNA:   3'- -CUAGCgc---CAUGUCC------AGCAUCUGCGCU- -5'
17130 3' -54.1 NC_004333.2 + 10091 1.09 0.001324
Target:  5'- gGAUCGCGGUACAGGUCGUAGACGCGAu -3'
miRNA:   3'- -CUAGCGCCAUGUCCAGCAUCUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.