miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17131 3' -54.4 NC_004333.2 + 37430 0.65 0.720233
Target:  5'- gACGcGGUGCAcGUCGCGUagccaggGCGaCGCAg- -3'
miRNA:   3'- -UGUuCUACGU-CAGCGCG-------UGC-GCGUac -5'
17131 3' -54.4 NC_004333.2 + 36215 0.66 0.710332
Target:  5'- aACGAGgcGUugaaGGUUGCGCcgguCGCGCAg- -3'
miRNA:   3'- -UGUUCuaCG----UCAGCGCGu---GCGCGUac -5'
17131 3' -54.4 NC_004333.2 + 39345 0.66 0.699255
Target:  5'- cCAAccUGCGaUCGCGCGCGCGUg-- -3'
miRNA:   3'- uGUUcuACGUcAGCGCGUGCGCGuac -5'
17131 3' -54.4 NC_004333.2 + 30496 0.66 0.699255
Target:  5'- cGCGAG--GCAGUCGCuacgGCGCGCGa- -3'
miRNA:   3'- -UGUUCuaCGUCAGCGcg--UGCGCGUac -5'
17131 3' -54.4 NC_004333.2 + 45036 0.66 0.699255
Target:  5'- -----cUGCAGUcggccgccgaCGUGCGCGCGCAg- -3'
miRNA:   3'- uguucuACGUCA----------GCGCGUGCGCGUac -5'
17131 3' -54.4 NC_004333.2 + 45652 0.66 0.688109
Target:  5'- -aAGGAcGCg--CGCGCGCuGCGCAUGc -3'
miRNA:   3'- ugUUCUaCGucaGCGCGUG-CGCGUAC- -5'
17131 3' -54.4 NC_004333.2 + 30190 0.66 0.688109
Target:  5'- cGCAGGGcaucuucCAGUUGCGCGgguCGCGCAUc -3'
miRNA:   3'- -UGUUCUac-----GUCAGCGCGU---GCGCGUAc -5'
17131 3' -54.4 NC_004333.2 + 14309 0.66 0.688109
Target:  5'- -aAAGAgGCGcgCGCGCACGCcgucGCAUGg -3'
miRNA:   3'- ugUUCUaCGUcaGCGCGUGCG----CGUAC- -5'
17131 3' -54.4 NC_004333.2 + 39257 0.66 0.676906
Target:  5'- cCGAGcgGCcGgcagGCGCACGCGCGc- -3'
miRNA:   3'- uGUUCuaCGuCag--CGCGUGCGCGUac -5'
17131 3' -54.4 NC_004333.2 + 13449 0.66 0.662277
Target:  5'- --uGGAUGaCGGUCGUGCGCaccgcgucgcgaauGCGCAg- -3'
miRNA:   3'- uguUCUAC-GUCAGCGCGUG--------------CGCGUac -5'
17131 3' -54.4 NC_004333.2 + 15170 0.67 0.654377
Target:  5'- aGCGAGcgGCAGU-GCGUAgGuCGCGUu -3'
miRNA:   3'- -UGUUCuaCGUCAgCGCGUgC-GCGUAc -5'
17131 3' -54.4 NC_004333.2 + 25120 0.67 0.643074
Target:  5'- gGCGAGcacgGCGG-CGCGCACGUucGCGg- -3'
miRNA:   3'- -UGUUCua--CGUCaGCGCGUGCG--CGUac -5'
17131 3' -54.4 NC_004333.2 + 44945 0.67 0.643074
Target:  5'- aGCGAGucggGCAgguuGUCGCGCGCG-GCGa- -3'
miRNA:   3'- -UGUUCua--CGU----CAGCGCGUGCgCGUac -5'
17131 3' -54.4 NC_004333.2 + 18390 0.68 0.597865
Target:  5'- aACGGcGUG-AGgaucgUGCGCACGCGCGUGc -3'
miRNA:   3'- -UGUUcUACgUCa----GCGCGUGCGCGUAC- -5'
17131 3' -54.4 NC_004333.2 + 44922 0.68 0.597865
Target:  5'- ---cGAUGC-GUCGCGCGCGC-CGa- -3'
miRNA:   3'- uguuCUACGuCAGCGCGUGCGcGUac -5'
17131 3' -54.4 NC_004333.2 + 11662 0.68 0.575404
Target:  5'- ------aGUAGUCGCGCAgGCGCu-- -3'
miRNA:   3'- uguucuaCGUCAGCGCGUgCGCGuac -5'
17131 3' -54.4 NC_004333.2 + 1100 0.68 0.564243
Target:  5'- cGCAAGuucacgucGCAGUCGCGCGCGaaGUcgGu -3'
miRNA:   3'- -UGUUCua------CGUCAGCGCGUGCg-CGuaC- -5'
17131 3' -54.4 NC_004333.2 + 44972 0.68 0.564243
Target:  5'- uCGAGAcGCAGcUCGaucaGCugGCGCAg- -3'
miRNA:   3'- uGUUCUaCGUC-AGCg---CGugCGCGUac -5'
17131 3' -54.4 NC_004333.2 + 17568 0.68 0.553141
Target:  5'- aGCAGGucgGUGCGGUCGaGUGCGagcaGCGUGa -3'
miRNA:   3'- -UGUUC---UACGUCAGCgCGUGCg---CGUAC- -5'
17131 3' -54.4 NC_004333.2 + 1852 0.68 0.552034
Target:  5'- uGCAGGccGguGUCGUGCgguucugACGCGCcUGg -3'
miRNA:   3'- -UGUUCuaCguCAGCGCG-------UGCGCGuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.