miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17132 3' -56.8 NC_004333.2 + 31694 0.66 0.622116
Target:  5'- uGUUC--ACGCGCGCgGCCAcAGCGGc -3'
miRNA:   3'- gCGAGacUGUGUGCGgCGGU-UCGUCc -5'
17132 3' -56.8 NC_004333.2 + 9348 0.66 0.622116
Target:  5'- uGCUCgucgucGGCGCGCGgCGUCGGGCc-- -3'
miRNA:   3'- gCGAGa-----CUGUGUGCgGCGGUUCGucc -5'
17132 3' -56.8 NC_004333.2 + 19636 0.66 0.611138
Target:  5'- gCGCggCcGACGCugGCCGUCAA-CAGc -3'
miRNA:   3'- -GCGa-GaCUGUGugCGGCGGUUcGUCc -5'
17132 3' -56.8 NC_004333.2 + 1268 0.66 0.611138
Target:  5'- uGCUCcuugGCGCGCCGCCuGGCGc- -3'
miRNA:   3'- gCGAGacugUGUGCGGCGGuUCGUcc -5'
17132 3' -56.8 NC_004333.2 + 39263 0.66 0.600178
Target:  5'- gGCcggCaGGCGCACGCgCGCgCGAucGCAGGu -3'
miRNA:   3'- gCGa--GaCUGUGUGCG-GCG-GUU--CGUCC- -5'
17132 3' -56.8 NC_004333.2 + 10813 0.66 0.600178
Target:  5'- cCGCgcgGuACgAUACGCCGCCAGuCGGGa -3'
miRNA:   3'- -GCGagaC-UG-UGUGCGGCGGUUcGUCC- -5'
17132 3' -56.8 NC_004333.2 + 11995 0.66 0.600178
Target:  5'- gCGCguaaUGGCgcGCGCGCCGCUgcGCAugccGGg -3'
miRNA:   3'- -GCGag--ACUG--UGUGCGGCGGuuCGU----CC- -5'
17132 3' -56.8 NC_004333.2 + 27500 0.66 0.600178
Target:  5'- gCGC-CUGGuCgACAgcCGUCGCCGcGCAGGg -3'
miRNA:   3'- -GCGaGACU-G-UGU--GCGGCGGUuCGUCC- -5'
17132 3' -56.8 NC_004333.2 + 37763 0.66 0.589244
Target:  5'- aGCgUCguuuCGuCACGCagGCCAAGCAGGc -3'
miRNA:   3'- gCG-AGacu-GU-GUGCGg-CGGUUCGUCC- -5'
17132 3' -56.8 NC_004333.2 + 30682 0.66 0.589244
Target:  5'- cCGUUC--GCGC-CGCCGCCGgcGGCGGc -3'
miRNA:   3'- -GCGAGacUGUGuGCGGCGGU--UCGUCc -5'
17132 3' -56.8 NC_004333.2 + 9707 0.66 0.578347
Target:  5'- aGC-CgGGCGCaggcGCGCCGCC-GGCAGc -3'
miRNA:   3'- gCGaGaCUGUG----UGCGGCGGuUCGUCc -5'
17132 3' -56.8 NC_004333.2 + 29727 0.66 0.57183
Target:  5'- aGCgCUGACcgcucgcguaguucuGCACGCCGCUuuGGCGuuGGa -3'
miRNA:   3'- gCGaGACUG---------------UGUGCGGCGGu-UCGU--CC- -5'
17132 3' -56.8 NC_004333.2 + 11786 0.66 0.567494
Target:  5'- uCGCgcagGACgccaGCACGCCGCCcGGCGc- -3'
miRNA:   3'- -GCGaga-CUG----UGUGCGGCGGuUCGUcc -5'
17132 3' -56.8 NC_004333.2 + 29072 0.66 0.567494
Target:  5'- cCGCgcgCgauGCGCACGCCGaCCcGGCGGc -3'
miRNA:   3'- -GCGa--Gac-UGUGUGCGGC-GGuUCGUCc -5'
17132 3' -56.8 NC_004333.2 + 28898 0.66 0.564248
Target:  5'- gCGCUC-GGCGCAggccggcgcauacuUGCCGUCGgugcguAGCGGGc -3'
miRNA:   3'- -GCGAGaCUGUGU--------------GCGGCGGU------UCGUCC- -5'
17132 3' -56.8 NC_004333.2 + 9895 0.67 0.556694
Target:  5'- gCGCUCaGGCG-ACGCgGaCGGGCAGGc -3'
miRNA:   3'- -GCGAGaCUGUgUGCGgCgGUUCGUCC- -5'
17132 3' -56.8 NC_004333.2 + 17425 0.67 0.545953
Target:  5'- aCGCgCUGACGaucaaaACGUCGCcCGGGCAccGGa -3'
miRNA:   3'- -GCGaGACUGUg-----UGCGGCG-GUUCGU--CC- -5'
17132 3' -56.8 NC_004333.2 + 7491 0.67 0.545953
Target:  5'- aGCUCUgGGCGC-CGCgCGUCGaaGGCAaGGa -3'
miRNA:   3'- gCGAGA-CUGUGuGCG-GCGGU--UCGU-CC- -5'
17132 3' -56.8 NC_004333.2 + 14315 0.67 0.545953
Target:  5'- gGCUCgaaagaGGCGCGCGCgcaCGCCGucGCAuGGg -3'
miRNA:   3'- gCGAGa-----CUGUGUGCG---GCGGUu-CGU-CC- -5'
17132 3' -56.8 NC_004333.2 + 28158 0.67 0.545953
Target:  5'- cCGCUC-GACACGaugaaccagauCGCgCGCaucuGGCAGGa -3'
miRNA:   3'- -GCGAGaCUGUGU-----------GCG-GCGgu--UCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.