miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17132 5' -51.1 NC_004333.2 + 47825 0.66 0.880784
Target:  5'- cGCCUGcgGACGGCGcuUCUuuggaggugagcaugUgGCUCGgcGCg -3'
miRNA:   3'- aUGGAC--UUGCCGU--AGA---------------A-CGAGCuuCG- -5'
17132 5' -51.1 NC_004333.2 + 12121 0.66 0.87757
Target:  5'- uUACC-GAGCGGCA-CgaGCUCGccGUc -3'
miRNA:   3'- -AUGGaCUUGCCGUaGaaCGAGCuuCG- -5'
17132 5' -51.1 NC_004333.2 + 21178 0.66 0.87757
Target:  5'- cUGCCgcaGGcCGGCc---UGCUCGggGCa -3'
miRNA:   3'- -AUGGa--CUuGCCGuagaACGAGCuuCG- -5'
17132 5' -51.1 NC_004333.2 + 5666 0.66 0.869341
Target:  5'- gGCCUGAACGuGCG-CaUGCcCGAuGGCc -3'
miRNA:   3'- aUGGACUUGC-CGUaGaACGaGCU-UCG- -5'
17132 5' -51.1 NC_004333.2 + 44613 0.66 0.869341
Target:  5'- gUACUUGuACGuGCGcgCgaagUGCUCGggGUg -3'
miRNA:   3'- -AUGGACuUGC-CGUa-Ga---ACGAGCuuCG- -5'
17132 5' -51.1 NC_004333.2 + 37114 0.66 0.869341
Target:  5'- cAgCUGcGgGGCG---UGCUCGAAGCg -3'
miRNA:   3'- aUgGACuUgCCGUagaACGAGCUUCG- -5'
17132 5' -51.1 NC_004333.2 + 19367 0.66 0.852074
Target:  5'- -uCCguaGACGGCcgugugCUUGCUCGcGAGCa -3'
miRNA:   3'- auGGac-UUGCCGua----GAACGAGC-UUCG- -5'
17132 5' -51.1 NC_004333.2 + 25518 0.67 0.833788
Target:  5'- gGCC-GAGC-GCGUCUUgguacgcgccGCUCGAGGUc -3'
miRNA:   3'- aUGGaCUUGcCGUAGAA----------CGAGCUUCG- -5'
17132 5' -51.1 NC_004333.2 + 20837 0.67 0.824288
Target:  5'- cUGCCcgacGGGCGGCcgcgcAUCcUGCUCGAAcGCc -3'
miRNA:   3'- -AUGGa---CUUGCCG-----UAGaACGAGCUU-CG- -5'
17132 5' -51.1 NC_004333.2 + 45272 0.67 0.824288
Target:  5'- cGCCUuggcucgcGAACGaCGUCccgaaGCUCGAGGCg -3'
miRNA:   3'- aUGGA--------CUUGCcGUAGaa---CGAGCUUCG- -5'
17132 5' -51.1 NC_004333.2 + 22980 0.67 0.814564
Target:  5'- aACUcGAGCGGCAgcaccgcgCUucUGCUCGucacGAGCg -3'
miRNA:   3'- aUGGaCUUGCCGUa-------GA--ACGAGC----UUCG- -5'
17132 5' -51.1 NC_004333.2 + 22380 0.67 0.794493
Target:  5'- cGCCgaGGAUGGcCGUCUgccaGgUCGAGGCu -3'
miRNA:   3'- aUGGa-CUUGCC-GUAGAa---CgAGCUUCG- -5'
17132 5' -51.1 NC_004333.2 + 9999 0.68 0.784171
Target:  5'- cACCUGcGCGGCGaCcUGCUCGuguGGg -3'
miRNA:   3'- aUGGACuUGCCGUaGaACGAGCu--UCg -5'
17132 5' -51.1 NC_004333.2 + 43395 0.68 0.784171
Target:  5'- gGCCgucaUGAuuucCGGCGUCg-GCUCGAucGGCa -3'
miRNA:   3'- aUGG----ACUu---GCCGUAGaaCGAGCU--UCG- -5'
17132 5' -51.1 NC_004333.2 + 2646 0.68 0.773673
Target:  5'- cGCCUGGACGGCcgUgaUUGC-CGAucgucucGCa -3'
miRNA:   3'- aUGGACUUGCCGuaG--AACGaGCUu------CG- -5'
17132 5' -51.1 NC_004333.2 + 37569 0.68 0.752207
Target:  5'- gGCCgUGGcCGGCGgcccaUUGCUCGAucuGCa -3'
miRNA:   3'- aUGG-ACUuGCCGUag---AACGAGCUu--CG- -5'
17132 5' -51.1 NC_004333.2 + 18381 0.68 0.741264
Target:  5'- aACCUcgcCGGCAUCaUGCUcgugccgucCGAAGCg -3'
miRNA:   3'- aUGGAcuuGCCGUAGaACGA---------GCUUCG- -5'
17132 5' -51.1 NC_004333.2 + 17045 0.68 0.741264
Target:  5'- gGCC--AAUGGCGUCaUGCUCGcGGUg -3'
miRNA:   3'- aUGGacUUGCCGUAGaACGAGCuUCG- -5'
17132 5' -51.1 NC_004333.2 + 9513 0.69 0.730199
Target:  5'- aUugCUGcAugGGCuugcgcGUUUUGCUCGAcgAGCu -3'
miRNA:   3'- -AugGAC-UugCCG------UAGAACGAGCU--UCG- -5'
17132 5' -51.1 NC_004333.2 + 36898 0.69 0.719026
Target:  5'- --aCUGGACGGCAcgcgCUaUGCUCGGacaaacgcaAGCa -3'
miRNA:   3'- augGACUUGCCGUa---GA-ACGAGCU---------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.