miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17133 3' -52.9 NC_004333.2 + 39874 0.66 0.841278
Target:  5'- uGCGC-GUUCGgacggccacaGCGCGAgcGGCgucGGUCGg -3'
miRNA:   3'- -UGCGaCAAGC----------UGCGCUaaCUG---CCAGC- -5'
17133 3' -52.9 NC_004333.2 + 17267 0.66 0.841278
Target:  5'- cGCGCUGcagauugccUUCGACGUGAacGcCGGcCGg -3'
miRNA:   3'- -UGCGAC---------AAGCUGCGCUaaCuGCCaGC- -5'
17133 3' -52.9 NC_004333.2 + 46361 0.66 0.823099
Target:  5'- cCGCUGcggaUUUGGCGCGGccuagGACaGUCGg -3'
miRNA:   3'- uGCGAC----AAGCUGCGCUaa---CUGcCAGC- -5'
17133 3' -52.9 NC_004333.2 + 24921 0.67 0.784345
Target:  5'- gUGCgGUUCG-UGCGGccgccGACGGUCGa -3'
miRNA:   3'- uGCGaCAAGCuGCGCUaa---CUGCCAGC- -5'
17133 3' -52.9 NC_004333.2 + 2109 0.67 0.774221
Target:  5'- cGCGCgGgcgUCGACGUGAUcgaugcggccgUGAC-GUCGg -3'
miRNA:   3'- -UGCGaCa--AGCUGCGCUA-----------ACUGcCAGC- -5'
17133 3' -52.9 NC_004333.2 + 45009 0.67 0.774221
Target:  5'- cGCGCUGUccggccgcUCGAcCGCGcgUGGCGcuggCGg -3'
miRNA:   3'- -UGCGACA--------AGCU-GCGCuaACUGCca--GC- -5'
17133 3' -52.9 NC_004333.2 + 35088 0.67 0.763946
Target:  5'- gAUGgUGUUCGGCGCGAccGGCaauGGUaCGg -3'
miRNA:   3'- -UGCgACAAGCUGCGCUaaCUG---CCA-GC- -5'
17133 3' -52.9 NC_004333.2 + 38958 0.67 0.763946
Target:  5'- aGCGCgaagCGGCGCGGgugcgcgGACGGgCGg -3'
miRNA:   3'- -UGCGacaaGCUGCGCUaa-----CUGCCaGC- -5'
17133 3' -52.9 NC_004333.2 + 46272 0.67 0.75667
Target:  5'- gGCGCUGaucCGGCGCGAgaccgcccagcccuCGGUCGc -3'
miRNA:   3'- -UGCGACaa-GCUGCGCUaacu----------GCCAGC- -5'
17133 3' -52.9 NC_004333.2 + 7707 0.68 0.74299
Target:  5'- aGCGgUGaUCGGCGCGGacagcGACGGaUCGu -3'
miRNA:   3'- -UGCgACaAGCUGCGCUaa---CUGCC-AGC- -5'
17133 3' -52.9 NC_004333.2 + 41151 0.68 0.740867
Target:  5'- uGCGguCUGUUCGACGCGAagguguacgaucUGAC-GUCGg -3'
miRNA:   3'- -UGC--GACAAGCUGCGCUa-----------ACUGcCAGC- -5'
17133 3' -52.9 NC_004333.2 + 29787 0.68 0.721571
Target:  5'- gGCGCgggUCGuuCGCGAc-GACGGUCa -3'
miRNA:   3'- -UGCGacaAGCu-GCGCUaaCUGCCAGc -5'
17133 3' -52.9 NC_004333.2 + 43775 0.68 0.721571
Target:  5'- aAUGCUGgaCcGCGCGAUaaaccugcuUGACGGUUa -3'
miRNA:   3'- -UGCGACaaGcUGCGCUA---------ACUGCCAGc -5'
17133 3' -52.9 NC_004333.2 + 2546 0.68 0.721571
Target:  5'- cCGCUGUUccaCGACGCGAaugcgaGACGaUCGg -3'
miRNA:   3'- uGCGACAA---GCUGCGCUaa----CUGCcAGC- -5'
17133 3' -52.9 NC_004333.2 + 25938 0.68 0.710719
Target:  5'- uGCGCg---CGGCGCGAUgccGGCGGcCa -3'
miRNA:   3'- -UGCGacaaGCUGCGCUAa--CUGCCaGc -5'
17133 3' -52.9 NC_004333.2 + 29129 0.68 0.699787
Target:  5'- aGCGCcaacUCGGCGCGAUcgugGGCGGcgCGg -3'
miRNA:   3'- -UGCGaca-AGCUGCGCUAa---CUGCCa-GC- -5'
17133 3' -52.9 NC_004333.2 + 47960 0.69 0.677733
Target:  5'- cGCGCUGgucgUCGGCGUcAUcGGCGGUg- -3'
miRNA:   3'- -UGCGACa---AGCUGCGcUAaCUGCCAgc -5'
17133 3' -52.9 NC_004333.2 + 4999 0.69 0.677733
Target:  5'- gACGCaGUaCGGCGCGAUguuuugGAUGG-CGa -3'
miRNA:   3'- -UGCGaCAaGCUGCGCUAa-----CUGCCaGC- -5'
17133 3' -52.9 NC_004333.2 + 26296 0.69 0.655499
Target:  5'- cGCGCcg-UCGAUGCGAaaGcCGGUCGa -3'
miRNA:   3'- -UGCGacaAGCUGCGCUaaCuGCCAGC- -5'
17133 3' -52.9 NC_004333.2 + 17790 0.69 0.633177
Target:  5'- -aGCUGUUaggaGACGUGGcUGAgUGGUCGa -3'
miRNA:   3'- ugCGACAAg---CUGCGCUaACU-GCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.