miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17133 5' -60.9 NC_004333.2 + 2621 0.66 0.450842
Target:  5'- cGCGacagacCG-ACCGCGCGGUucaucgcgcuugCCGGCGu -3'
miRNA:   3'- cCGCaua---GCaUGGCGCGCCG------------GGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 41294 0.66 0.450842
Target:  5'- cGGCGacuUCGacgagGCCGaGCucGCCCGGCGc -3'
miRNA:   3'- -CCGCau-AGCa----UGGCgCGc-CGGGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 23048 0.66 0.441451
Target:  5'- cGGCGaccgGUACCGCGaCGcugCCGGCGg -3'
miRNA:   3'- -CCGCauagCAUGGCGC-GCcg-GGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 23680 0.66 0.441451
Target:  5'- cGGCGgcugcAUCGUgGCCG-GCGGaaaaCCGaGCGa -3'
miRNA:   3'- -CCGCa----UAGCA-UGGCgCGCCg---GGC-CGC- -5'
17133 5' -60.9 NC_004333.2 + 8635 0.66 0.441451
Target:  5'- cGCGacGUCGaGCUcgGCGCGgcGCCCGGCu -3'
miRNA:   3'- cCGCa-UAGCaUGG--CGCGC--CGGGCCGc -5'
17133 5' -60.9 NC_004333.2 + 38380 0.66 0.441451
Target:  5'- cGCGUGUCGggugcGCCgGCGUGaCgCCGGCc -3'
miRNA:   3'- cCGCAUAGCa----UGG-CGCGCcG-GGCCGc -5'
17133 5' -60.9 NC_004333.2 + 38303 0.66 0.441451
Target:  5'- cGCGac-CGUGCa-CGCGGCgaCCGGCGa -3'
miRNA:   3'- cCGCauaGCAUGgcGCGCCG--GGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 5044 0.66 0.441451
Target:  5'- aGGCGgc-CGgcuguugGCCGaCGuCGGCgCGGCGc -3'
miRNA:   3'- -CCGCauaGCa------UGGC-GC-GCCGgGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 31257 0.66 0.441451
Target:  5'- cGGCGuUGUCGagUACgGCGCGccGUCUGGgCGg -3'
miRNA:   3'- -CCGC-AUAGC--AUGgCGCGC--CGGGCC-GC- -5'
17133 5' -60.9 NC_004333.2 + 35533 0.66 0.438655
Target:  5'- uGGC-UGUUGaGCUGUGCggcggucagaacuuGGCCCGGUGc -3'
miRNA:   3'- -CCGcAUAGCaUGGCGCG--------------CCGGGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 42012 0.66 0.432172
Target:  5'- cGGUGcg-CGUGaagCGCGCGGCCaaCGaGCGg -3'
miRNA:   3'- -CCGCauaGCAUg--GCGCGCCGG--GC-CGC- -5'
17133 5' -60.9 NC_004333.2 + 29026 0.66 0.432172
Target:  5'- cGCGU-UCG-ACCGCGUGaacaacgcguGCCuCGGCGc -3'
miRNA:   3'- cCGCAuAGCaUGGCGCGC----------CGG-GCCGC- -5'
17133 5' -60.9 NC_004333.2 + 15971 0.66 0.432172
Target:  5'- gGGCG-GUCGcAUCGUcuacgaugGCGGUCaCGGCGg -3'
miRNA:   3'- -CCGCaUAGCaUGGCG--------CGCCGG-GCCGC- -5'
17133 5' -60.9 NC_004333.2 + 25377 0.66 0.432172
Target:  5'- cGCGgcaGUCGc-CgGCGuCGGCCCGGUu -3'
miRNA:   3'- cCGCa--UAGCauGgCGC-GCCGGGCCGc -5'
17133 5' -60.9 NC_004333.2 + 39566 0.66 0.43125
Target:  5'- cGGCGUGUCGUccguuacGCCGCGCGcuuccaucuucGCCUu--- -3'
miRNA:   3'- -CCGCAUAGCA-------UGGCGCGC-----------CGGGccgc -5'
17133 5' -60.9 NC_004333.2 + 18959 0.66 0.43033
Target:  5'- aGGCGgccuucgaugCGUuCUGgGCGcCCCGGCGg -3'
miRNA:   3'- -CCGCaua-------GCAuGGCgCGCcGGGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 23121 0.66 0.423007
Target:  5'- cGGCGgcacugaUGUugCGCGCGGaCUGGaCGa -3'
miRNA:   3'- -CCGCaua----GCAugGCGCGCCgGGCC-GC- -5'
17133 5' -60.9 NC_004333.2 + 46800 0.66 0.423007
Target:  5'- aGCGUGcCGUcuauACCGUGCGcaacacgaacguGCUCGGCa -3'
miRNA:   3'- cCGCAUaGCA----UGGCGCGC------------CGGGCCGc -5'
17133 5' -60.9 NC_004333.2 + 1258 0.66 0.423007
Target:  5'- cGGCaUGaCGUGCUccuugGCGCGccGCCUGGCGc -3'
miRNA:   3'- -CCGcAUaGCAUGG-----CGCGC--CGGGCCGC- -5'
17133 5' -60.9 NC_004333.2 + 3902 0.66 0.41396
Target:  5'- uGGUGUcGUgGUAgCGCcagGCGGCagCGGCGg -3'
miRNA:   3'- -CCGCA-UAgCAUgGCG---CGCCGg-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.