miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 3' -54.2 NC_004333.2 + 14390 0.66 0.739443
Target:  5'- aGAGgcgGCGaacgGUGCCGCGCUgaucGACauGCUg -3'
miRNA:   3'- -UUCa--UGCga--CAUGGCGCGAa---CUG--CGG- -5'
17134 3' -54.2 NC_004333.2 + 1732 0.66 0.739443
Target:  5'- ---aGCGCUGUuuccgACCGCGCa--GCGCa -3'
miRNA:   3'- uucaUGCGACA-----UGGCGCGaacUGCGg -5'
17134 3' -54.2 NC_004333.2 + 13730 0.66 0.739443
Target:  5'- ---cAUGCUcGUGCCguugaagucgaGCGCguagGACGCCg -3'
miRNA:   3'- uucaUGCGA-CAUGG-----------CGCGaa--CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 31231 0.66 0.728641
Target:  5'- cGGU-CGCgacgGCCGCGCggcgcaGCGCCg -3'
miRNA:   3'- uUCAuGCGaca-UGGCGCGaac---UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 8947 0.66 0.728641
Target:  5'- aAGGUGCGCggcuaACCGCGCcgca-GCCg -3'
miRNA:   3'- -UUCAUGCGaca--UGGCGCGaacugCGG- -5'
17134 3' -54.2 NC_004333.2 + 33108 0.66 0.728641
Target:  5'- --cUACGCacGUGCgGCGCUcaaagcgaucGACGCCg -3'
miRNA:   3'- uucAUGCGa-CAUGgCGCGAa---------CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 18788 0.66 0.717738
Target:  5'- ----uCGCUGaACCGCGCUUaucGCGCg -3'
miRNA:   3'- uucauGCGACaUGGCGCGAAc--UGCGg -5'
17134 3' -54.2 NC_004333.2 + 16840 0.66 0.717738
Target:  5'- cGGUACGCcuUGCCGUGUc-GGCGCa -3'
miRNA:   3'- uUCAUGCGacAUGGCGCGaaCUGCGg -5'
17134 3' -54.2 NC_004333.2 + 48176 0.66 0.717738
Target:  5'- ---gGCGCgGUGCgCGCGCccggUUGcCGCCu -3'
miRNA:   3'- uucaUGCGaCAUG-GCGCG----AACuGCGG- -5'
17134 3' -54.2 NC_004333.2 + 43450 0.66 0.717738
Target:  5'- ---cGCGCgcauCgCGCGCUUGcGCGCCg -3'
miRNA:   3'- uucaUGCGacauG-GCGCGAAC-UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 18542 0.66 0.706746
Target:  5'- cGGGUACGCcuccgGUGCCGgGUU--GCGCg -3'
miRNA:   3'- -UUCAUGCGa----CAUGGCgCGAacUGCGg -5'
17134 3' -54.2 NC_004333.2 + 30699 0.66 0.706746
Target:  5'- ---cGCGCcuUGCCGCGCUgcugcacgaccUGGCGUCc -3'
miRNA:   3'- uucaUGCGacAUGGCGCGA-----------ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 11278 0.66 0.706746
Target:  5'- cGAGUuCGCguUGCCGCGCgcugUUGaacuGCGCCg -3'
miRNA:   3'- -UUCAuGCGacAUGGCGCG----AAC----UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 198 0.66 0.706746
Target:  5'- -cGUGCGCcc-GCCG-GCUUGgcuuGCGCCa -3'
miRNA:   3'- uuCAUGCGacaUGGCgCGAAC----UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 12381 0.66 0.695677
Target:  5'- ---cGCGCgagGcUGgCGCGCagGACGCCg -3'
miRNA:   3'- uucaUGCGa--C-AUgGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 40107 0.66 0.684544
Target:  5'- --uUGCGaggcGU-CCGCGCcgUGGCGCCg -3'
miRNA:   3'- uucAUGCga--CAuGGCGCGa-ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 47472 0.66 0.684544
Target:  5'- ---cGCGCcGgcggcgacUGCCGCGCUgaacgaGGCGCCg -3'
miRNA:   3'- uucaUGCGaC--------AUGGCGCGAa-----CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 11809 0.67 0.66213
Target:  5'- cGGUGCcggucgGCUGccggacAUCGCGCagGACGCCa -3'
miRNA:   3'- uUCAUG------CGACa-----UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 18032 0.67 0.650874
Target:  5'- cGAGUucuacGCGCUG-AUCGCGCUgccCGCUg -3'
miRNA:   3'- -UUCA-----UGCGACaUGGCGCGAacuGCGG- -5'
17134 3' -54.2 NC_004333.2 + 6668 0.67 0.650874
Target:  5'- ---gGCGCUGgGCgGCGCgccgUGGCGgCg -3'
miRNA:   3'- uucaUGCGACaUGgCGCGa---ACUGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.