Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17134 | 3' | -54.2 | NC_004333.2 | + | 10848 | 0.94 | 0.011181 |
Target: 5'- cAAGUACGCUGU-CaCGCGCUUGACGCCg -3' miRNA: 3'- -UUCAUGCGACAuG-GCGCGAACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 45006 | 0.77 | 0.192311 |
Target: 5'- cGGcGCGCUGUccggccgcucgACCGCGCgUGGCGCUg -3' miRNA: 3'- uUCaUGCGACA-----------UGGCGCGaACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25716 | 0.77 | 0.192311 |
Target: 5'- cAAG-ACGCUuucgACCGCGCUgacGACGCCg -3' miRNA: 3'- -UUCaUGCGAca--UGGCGCGAa--CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44466 | 0.77 | 0.192311 |
Target: 5'- cAGgcCGUUGUACCGCGCac-GCGCCg -3' miRNA: 3'- uUCauGCGACAUGGCGCGaacUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 2941 | 0.75 | 0.245325 |
Target: 5'- -cGUGcCGCUGUagcccugcaGCUGCGCgagcgUGACGCCc -3' miRNA: 3'- uuCAU-GCGACA---------UGGCGCGa----ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 30072 | 0.74 | 0.265521 |
Target: 5'- cGAGcgGCGCcgcaugGUGCuCGCGCUcGGCGCCg -3' miRNA: 3'- -UUCa-UGCGa-----CAUG-GCGCGAaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 31312 | 0.74 | 0.265521 |
Target: 5'- cGAGacgGCGCUGcGCCGCGCggccgucGCGCCg -3' miRNA: 3'- -UUCa--UGCGACaUGGCGCGaac----UGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 29971 | 0.72 | 0.351057 |
Target: 5'- ---aGCGCg--GCCGCGCUgccaccGGCGCCg -3' miRNA: 3'- uucaUGCGacaUGGCGCGAa-----CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 5137 | 0.72 | 0.368567 |
Target: 5'- ---gACGCUGUucagcGCCGCGCc-GACGUCg -3' miRNA: 3'- uucaUGCGACA-----UGGCGCGaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 37243 | 0.72 | 0.377544 |
Target: 5'- uGAGcgGCGUgucGCCGCGCUgcggGAUGCCg -3' miRNA: 3'- -UUCa-UGCGacaUGGCGCGAa---CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 19502 | 0.72 | 0.377544 |
Target: 5'- uGGcGCGCUG-GCgGCGCUcGugGCCg -3' miRNA: 3'- uUCaUGCGACaUGgCGCGAaCugCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 28878 | 0.71 | 0.424576 |
Target: 5'- ---aGCGCUcGUGCCGCGCgaucGCGCUc -3' miRNA: 3'- uucaUGCGA-CAUGGCGCGaac-UGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 20965 | 0.71 | 0.424576 |
Target: 5'- cAAGUagcacGCGCUGcGCCGgGCUcGuCGCCg -3' miRNA: 3'- -UUCA-----UGCGACaUGGCgCGAaCuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44378 | 0.7 | 0.485365 |
Target: 5'- cAGGUGCGCUGcucgGCgGCGCgu-GCGCg -3' miRNA: 3'- -UUCAUGCGACa---UGgCGCGaacUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 9679 | 0.7 | 0.495903 |
Target: 5'- cGGUGCGCaaccgGccgaUGCCGCGCcggcUGGCGCUg -3' miRNA: 3'- uUCAUGCGa----C----AUGGCGCGa---ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 38944 | 0.7 | 0.485365 |
Target: 5'- cGGGUGCGCggacggGCgGCGUUcguaUGGCGCCc -3' miRNA: 3'- -UUCAUGCGaca---UGgCGCGA----ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 7779 | 0.69 | 0.554412 |
Target: 5'- -cGU-CGCUGU-CCGCGCcgaucaccgcuacGACGCCg -3' miRNA: 3'- uuCAuGCGACAuGGCGCGaa-----------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 7152 | 0.69 | 0.549998 |
Target: 5'- -uGUACGCa--ACUGCGCgaGACGUCa -3' miRNA: 3'- uuCAUGCGacaUGGCGCGaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 33144 | 0.69 | 0.548897 |
Target: 5'- ---cACGCUGaccgaguUGCCaGCGCUcGugGCCg -3' miRNA: 3'- uucaUGCGAC-------AUGG-CGCGAaCugCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 28552 | 0.69 | 0.505475 |
Target: 5'- --uUGCGC-GUGCCGCGUUgcgacugUGGCGCg -3' miRNA: 3'- uucAUGCGaCAUGGCGCGA-------ACUGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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