miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 3' -54.2 NC_004333.2 + 10848 0.94 0.011181
Target:  5'- cAAGUACGCUGU-CaCGCGCUUGACGCCg -3'
miRNA:   3'- -UUCAUGCGACAuG-GCGCGAACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 45006 0.77 0.192311
Target:  5'- cGGcGCGCUGUccggccgcucgACCGCGCgUGGCGCUg -3'
miRNA:   3'- uUCaUGCGACA-----------UGGCGCGaACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 44466 0.77 0.192311
Target:  5'- cAGgcCGUUGUACCGCGCac-GCGCCg -3'
miRNA:   3'- uUCauGCGACAUGGCGCGaacUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 25716 0.77 0.192311
Target:  5'- cAAG-ACGCUuucgACCGCGCUgacGACGCCg -3'
miRNA:   3'- -UUCaUGCGAca--UGGCGCGAa--CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 2941 0.75 0.245325
Target:  5'- -cGUGcCGCUGUagcccugcaGCUGCGCgagcgUGACGCCc -3'
miRNA:   3'- uuCAU-GCGACA---------UGGCGCGa----ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 31312 0.74 0.265521
Target:  5'- cGAGacgGCGCUGcGCCGCGCggccgucGCGCCg -3'
miRNA:   3'- -UUCa--UGCGACaUGGCGCGaac----UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 30072 0.74 0.265521
Target:  5'- cGAGcgGCGCcgcaugGUGCuCGCGCUcGGCGCCg -3'
miRNA:   3'- -UUCa-UGCGa-----CAUG-GCGCGAaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 29971 0.72 0.351057
Target:  5'- ---aGCGCg--GCCGCGCUgccaccGGCGCCg -3'
miRNA:   3'- uucaUGCGacaUGGCGCGAa-----CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 5137 0.72 0.368567
Target:  5'- ---gACGCUGUucagcGCCGCGCc-GACGUCg -3'
miRNA:   3'- uucaUGCGACA-----UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 37243 0.72 0.377544
Target:  5'- uGAGcgGCGUgucGCCGCGCUgcggGAUGCCg -3'
miRNA:   3'- -UUCa-UGCGacaUGGCGCGAa---CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 19502 0.72 0.377544
Target:  5'- uGGcGCGCUG-GCgGCGCUcGugGCCg -3'
miRNA:   3'- uUCaUGCGACaUGgCGCGAaCugCGG- -5'
17134 3' -54.2 NC_004333.2 + 20965 0.71 0.424576
Target:  5'- cAAGUagcacGCGCUGcGCCGgGCUcGuCGCCg -3'
miRNA:   3'- -UUCA-----UGCGACaUGGCgCGAaCuGCGG- -5'
17134 3' -54.2 NC_004333.2 + 28878 0.71 0.424576
Target:  5'- ---aGCGCUcGUGCCGCGCgaucGCGCUc -3'
miRNA:   3'- uucaUGCGA-CAUGGCGCGaac-UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 38944 0.7 0.485365
Target:  5'- cGGGUGCGCggacggGCgGCGUUcguaUGGCGCCc -3'
miRNA:   3'- -UUCAUGCGaca---UGgCGCGA----ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 44378 0.7 0.485365
Target:  5'- cAGGUGCGCUGcucgGCgGCGCgu-GCGCg -3'
miRNA:   3'- -UUCAUGCGACa---UGgCGCGaacUGCGg -5'
17134 3' -54.2 NC_004333.2 + 9679 0.7 0.495903
Target:  5'- cGGUGCGCaaccgGccgaUGCCGCGCcggcUGGCGCUg -3'
miRNA:   3'- uUCAUGCGa----C----AUGGCGCGa---ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 38372 0.69 0.50334
Target:  5'- ---cGCGCUGUcgcgugucgggugcGCCG-GCgUGACGCCg -3'
miRNA:   3'- uucaUGCGACA--------------UGGCgCGaACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 28552 0.69 0.505475
Target:  5'- --uUGCGC-GUGCCGCGUUgcgacugUGGCGCg -3'
miRNA:   3'- uucAUGCGaCAUGGCGCGA-------ACUGCGg -5'
17134 3' -54.2 NC_004333.2 + 4852 0.69 0.528105
Target:  5'- -cGUACGCgcgcGCCGUGCc-GAUGCCg -3'
miRNA:   3'- uuCAUGCGaca-UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 25883 0.69 0.534641
Target:  5'- uGGUGCGCgagcgccaagcGCCGCGCUUcGcCGCCc -3'
miRNA:   3'- uUCAUGCGaca--------UGGCGCGAA-CuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.